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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	1989107	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04260
SBS	Chr10	1989108	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04260
SBS	Chr10	22374091	C-A	Homo
SBS	Chr12	22241917	C-T	Homo
SBS	Chr12	27504014	T-C	Homo
SBS	Chr12	2854908	G-A	HET
SBS	Chr2	32660813	G-T	HET
SBS	Chr2	33914192	A-T	HET	STOP_GAINED	LOC_Os02g55370
SBS	Chr2	527376	G-T	Homo
SBS	Chr2	5772092	G-A	Homo
SBS	Chr3	13455194	C-T	HET
SBS	Chr4	34788799	C-T	HET
SBS	Chr5	18633408	G-A	HET
SBS	Chr6	12218288	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g21150
SBS	Chr6	29094621	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g48080
SBS	Chr6	4612761	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g09170
SBS	Chr7	13002205	G-A	HET
SBS	Chr8	21017490	A-T	HET
SBS	Chr8	25563628	G-A	Homo
SBS	Chr9	17612710	G-T	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	396416	396422	6
Deletion	Chr10	3500521	3500527	6
Deletion	Chr8	6705001	6722000	16999	2
Deletion	Chr8	6763001	6936000	172999	27
Deletion	Chr3	6797001	6817000	19999	2
Deletion	Chr8	6939001	7148000	208999	29
Deletion	Chr6	7136001	7147000	10999	2
Deletion	Chr8	7150001	7185000	34999	6
Deletion	Chr8	7199001	7211000	11999	4
Deletion	Chr8	7221001	7232000	10999	2
Deletion	Chr8	7236001	7283000	46999	7
Deletion	Chr8	7293001	7309000	15999	2
Deletion	Chr10	8737043	8737044	1
Deletion	Chr1	13359645	13359653	8
Deletion	Chr4	19452085	19452088	3
Deletion	Chr2	19486820	19486826	6
Deletion	Chr7	19964476	19964486	10
Deletion	Chr7	20229215	20229221	6
Deletion	Chr3	21456968	21456970	2
Deletion	Chr3	23564915	23564927	12
Deletion	Chr11	25356391	25356396	5
Deletion	Chr2	33501481	33501489	8
Deletion	Chr1	35801304	35801309	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	10157173	10157173	1
Insertion	Chr3	16176063	16176066	4

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4907894	Chr4	7638606	LOC_Os04g13690

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