Search Results
| Mutant Information |
|---|
| Mutant Name | FN4125-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4125-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12246076 | T-A | Homo | ||
| SBS | Chr1 | 40685653 | T-A | HET | ||
| SBS | Chr2 | 8813917 | C-A | Homo | STOP_GAINED | LOC_Os02g15660 |
| SBS | Chr2 | 14494614 | C-T | Homo | ||
| SBS | Chr2 | 16304844 | T-A | Homo | ||
| SBS | Chr3 | 13680781 | T-A | HET | ||
| SBS | Chr3 | 36055048 | T-C | HET | ||
| SBS | Chr4 | 1538725 | C-T | Homo | ||
| SBS | Chr4 | 12512948 | G-A | Homo | ||
| SBS | Chr4 | 14117070 | C-A | HET | ||
| SBS | Chr5 | 1346825 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03310 |
| SBS | Chr6 | 11367176 | G-C | HET | ||
| SBS | Chr7 | 8425294 | G-A | Homo | ||
| SBS | Chr7 | 8425295 | G-A | Homo | ||
| SBS | Chr7 | 22166655 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g36990 |
| SBS | Chr8 | 2017524 | T-A | HET | ||
| SBS | Chr8 | 26580090 | C-G | HET | ||
| SBS | Chr8 | 27948970 | G-A | HET | ||
| SBS | Chr9 | 6162278 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g11110 |
| SBS | Chr9 | 19286134 | T-A | HET | ||
| SBS | Chr11 | 18546914 | T-C | Homo | ||
| SBS | Chr12 | 8954890 | G-T | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 3448001 | 3491000 | 42999 | 4 |
| Deletion | Chr7 | 4229008 | 4229011 | 3 | |
| Deletion | Chr7 | 7182718 | 7182720 | 2 | LOC_Os07g12580 |
| Deletion | Chr11 | 12118512 | 12118700 | 188 | |
| Deletion | Chr11 | 14837915 | 14837918 | 3 | |
| Deletion | Chr1 | 20214537 | 20214541 | 4 | LOC_Os01g36420 |
| Deletion | Chr11 | 22021380 | 22021391 | 11 | |
| Deletion | Chr4 | 26855001 | 26909000 | 53999 | 8 |
| Deletion | Chr4 | 26913001 | 27249000 | 335999 | 49 |
| Deletion | Chr1 | 37090001 | 37160000 | 69999 | 8 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 10534822 | 10534829 | 8 | |
| Insertion | Chr11 | 9325218 | 9325219 | 2 | |
| Insertion | Chr11 | 28945374 | 28945375 | 2 | |
| Insertion | Chr3 | 18716593 | 18716593 | 1 | |
| Insertion | Chr4 | 11627090 | 11627090 | 1 | |
| Insertion | Chr12 | 11689896 | 11689896 | 1 | |
| Insertion | Chr12 | 20256830 | 20256830 | 1 | |
| Insertion | Chr12 | 25851987 | 25851987 | 1 | LOC_Os12g41730 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 8220867 | Chr4 | 3485801 | 2 |
| Translocation | Chr10 | 20201255 | Chr1 | 37159694 | LOC_Os10g37740 |
| Translocation | Chr10 | 20201329 | Chr1 | 37163254 | LOC_Os10g37740 |
| Translocation | Chr4 | 33501718 | Chr2 | 18529809 | 2 |
| Translocation | Chr4 | 33503436 | Chr2 | 18529808 | 2 |