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| Mutant Information |
|---|
| Mutant Name | FN4126-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4126-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21263690 | T-A | HET | ||
| SBS | Chr1 | 42400898 | C-A | Homo | ||
| SBS | Chr10 | 22594718 | A-G | Homo | ||
| SBS | Chr12 | 19147386 | A-G | HET | ||
| SBS | Chr2 | 26600783 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g44070 |
| SBS | Chr2 | 2972061 | C-A | HET | ||
| SBS | Chr2 | 30997556 | G-A | HET | ||
| SBS | Chr2 | 7404383 | T-C | HET | ||
| SBS | Chr3 | 11599242 | G-A | Homo | ||
| SBS | Chr3 | 29714552 | C-T | HET | ||
| SBS | Chr3 | 5114445 | A-T | Homo | ||
| SBS | Chr3 | 7959502 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g14642 |
| SBS | Chr3 | 7959503 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g14642 |
| SBS | Chr4 | 10907897 | C-T | HET | ||
| SBS | Chr4 | 2381688 | G-A | HET | ||
| SBS | Chr4 | 31054872 | T-C | HET | ||
| SBS | Chr4 | 31054875 | T-C | HET | ||
| SBS | Chr4 | 31234450 | A-G | HET | ||
| SBS | Chr5 | 20826976 | C-T | Homo | ||
| SBS | Chr5 | 29805689 | C-T | HET | ||
| SBS | Chr5 | 9740849 | G-A | HET | ||
| SBS | Chr7 | 16443538 | G-C | Homo | ||
| SBS | Chr7 | 18265419 | T-C | Homo | ||
| SBS | Chr8 | 27832694 | G-A | HET | ||
| SBS | Chr9 | 10313405 | C-A | HET | ||
| SBS | Chr9 | 16850126 | A-G | HET | ||
| SBS | Chr9 | 6735634 | G-C | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1503881 | 1503903 | 22 | |
| Deletion | Chr7 | 12229807 | 12229808 | 1 | |
| Deletion | Chr2 | 13572380 | 13572382 | 2 | LOC_Os02g22790 |
| Deletion | Chr6 | 13594409 | 13594410 | 1 | |
| Deletion | Chr5 | 23127117 | 23127119 | 2 | |
| Deletion | Chr8 | 26672356 | 26672357 | 1 | |
| Deletion | Chr3 | 35515897 | 35515905 | 8 | LOC_Os03g62750 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 15983382 | 15983459 | 78 | |
| Insertion | Chr3 | 20637990 | 20637990 | 1 | |
| Insertion | Chr4 | 15715307 | 15715312 | 6 | |
| Insertion | Chr8 | 23542876 | 23542881 | 6 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 19999371 | 20184404 | |
| Inversion | Chr1 | 20184404 | 20538964 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 8867726 | Chr3 | 13456993 | 2 |
| Translocation | Chr5 | 9425501 | Chr4 | 4120501 | LOC_Os04g07740 |
| Translocation | Chr11 | 13301151 | Chr3 | 11644116 | |
| Translocation | Chr11 | 13301682 | Chr3 | 11644116 | |
| Translocation | Chr4 | 13328241 | Chr3 | 10702939 | 2 |
| Translocation | Chr6 | 13699043 | Chr1 | 2503084 | |
| Translocation | Chr8 | 14544553 | Chr1 | 37438118 | LOC_Os08g24050 |
| Translocation | Chr5 | 21175229 | Chr3 | 23146317 | 2 |
| Translocation | Chr8 | 21684511 | Chr2 | 16776163 | |
| Translocation | Chr7 | 21930335 | Chr3 | 4034551 |