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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11368253	C-G	HET
SBS	Chr1	18065342	G-A	HET
SBS	Chr1	32811987	T-C	HET
SBS	Chr1	3574930	G-A	HET
SBS	Chr1	35941627	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g62100
SBS	Chr10	20833789	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39084
SBS	Chr10	9823008	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g19280
SBS	Chr11	18141529	T-G	HET
SBS	Chr11	587567	G-A	HET
SBS	Chr12	10844427	G-A	HET
SBS	Chr12	11888574	G-C	HET
SBS	Chr12	13795131	A-G	HET
SBS	Chr12	14978162	C-T	HET
SBS	Chr12	24441160	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g39600
SBS	Chr2	15683212	G-T	HET
SBS	Chr2	16281474	G-C	HET
SBS	Chr2	23962042	C-T	Homo
SBS	Chr2	32499182	T-C	Homo
SBS	Chr3	17055010	A-C	HET
SBS	Chr3	29328655	G-A	HET
SBS	Chr3	33122697	C-T	Homo
SBS	Chr3	9704988	G-T	HET
SBS	Chr4	11094614	T-C	HET
SBS	Chr4	11165765	C-T	HET
SBS	Chr4	16670364	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28210
SBS	Chr4	2639767	T-A	HET	STOP_GAINED	LOC_Os04g05300
SBS	Chr5	18209315	T-C	Homo
SBS	Chr6	12959088	G-A	Homo
SBS	Chr6	12959089	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g22320
SBS	Chr6	12959090	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g22320
SBS	Chr6	2879455	C-A	Homo
SBS	Chr7	10608673	C-T	Homo
SBS	Chr7	371115	C-T	HET
SBS	Chr8	63731	A-G	Homo
SBS	Chr9	12681309	G-A	HET
SBS	Chr9	22541764	C-T	Homo
SBS	Chr9	5347013	C-G	HET
SBS	Chr9	9037369	C-T	HET	STOP_GAINED	LOC_Os09g15010

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	9638828	9638829	1
Deletion	Chr1	10186488	10186490	2
Deletion	Chr2	14638001	14722000	83999	11
Deletion	Chr5	18424001	18434000	9999	4
Deletion	Chr5	21885540	21885549	9
Deletion	Chr2	22184920	22184921	1
Deletion	Chr11	25459318	25459319	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	8667874	8667874	1
Insertion	Chr4	7947891	7947891	1
Insertion	Chr6	1886472	1886555	84
Insertion	Chr7	19026030	19026033	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21169541	21188626	LOC_Os05g35650

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1612423	Chr5	15682835	2
Translocation	Chr12	2399395	Chr1	32064842	LOC_Os12g05334
Translocation	Chr9	2693587	Chr8	2999283
Translocation	Chr2	4505184	Chr1	5329583	LOC_Os01g10150
Translocation	Chr2	4505701	Chr1	5332097	LOC_Os01g10150
Translocation	Chr9	4757291	Chr5	5134646	LOC_Os05g09180
Translocation	Chr8	4812158	Chr6	8549421
Translocation	Chr12	5179131	Chr8	15024737
Translocation	Chr12	7863769	Chr11	16498107
Translocation	Chr8	10395237	Chr1	31269133
Translocation	Chr10	19290775	Chr5	6354791
Translocation	Chr4	32897644	Chr1	39114202
Translocation	Chr4	34473336	Chr3	89768	LOC_Os03g01120
Translocation	Chr4	34473337	Chr1	5329574	LOC_Os01g10150

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