Search Results
| Mutant Information |
|---|
| Mutant Name | FN413-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN413-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20236577 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 21617622 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 19058228 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 25080617 | G-A | HOMO | INTRON | |
| SBS | Chr2 | 34680935 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 8016549 | G-T | HOMO | INTRON | |
| SBS | Chr4 | 15070928 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 32179167 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g53998 |
| SBS | Chr4 | 32179168 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g53998 |
| SBS | Chr7 | 26893793 | G-A | HET | INTRON | |
| SBS | Chr8 | 10039124 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g16420 |
| SBS | Chr9 | 5444444 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 18842493 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 18540657 | T-C | HOMO | INTRON | |
| SBS | Chr11 | 24886444 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 24886451 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 9536389 | A-G | HET | INTRON | |
| SBS | Chr12 | 10009923 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 22945981 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 22945982 | A-T | HOMO | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 619666 | 619671 | 5 | |
| Deletion | Chr12 | 2079377 | 2079382 | 5 | LOC_Os12g04840 |
| Deletion | Chr12 | 2166560 | 2166562 | 2 | |
| Deletion | Chr7 | 3859075 | 3859152 | 77 | |
| Deletion | Chr7 | 4077154 | 4083131 | 5977 | LOC_Os07g08050 |
| Deletion | Chr9 | 6103641 | 6103642 | 1 | |
| Deletion | Chr7 | 11153010 | 11153011 | 1 | |
| Deletion | Chr12 | 11921152 | 11921157 | 5 | |
| Deletion | Chr2 | 13240909 | 13240910 | 1 | |
| Deletion | Chr2 | 19059208 | 19059276 | 68 | LOC_Os02g32280 |
| Deletion | Chr11 | 21040653 | 21040654 | 1 | |
| Deletion | Chr3 | 23699053 | 23699065 | 12 | |
| Deletion | Chr7 | 24810482 | 24810488 | 6 | |
| Deletion | Chr8 | 25081143 | 25081158 | 15 | |
| Deletion | Chr7 | 25565450 | 25565490 | 40 | LOC_Os07g42700 |
| Deletion | Chr3 | 26344900 | 26344901 | 1 | |
| Deletion | Chr6 | 29700800 | 29700813 | 13 | |
| Deletion | Chr1 | 41501313 | 41501315 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 23566206 | 23566207 | 2 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 10073978 | 12284907 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2998747 | Chr1 | 37755113 | |
| Translocation | Chr7 | 4077160 | Chr1 | 4884454 | LOC_Os01g09550 |
| Translocation | Chr7 | 4083120 | Chr1 | 4884449 | 2 |
| Translocation | Chr11 | 13171533 | Chr8 | 9661277 | LOC_Os11g22910 |
| Translocation | Chr6 | 16306805 | Chr4 | 26648645 | LOC_Os04g45040 |
| Translocation | Chr4 | 16416703 | Chr1 | 32335247 | LOC_Os01g56150 |
| Translocation | Chr5 | 26352389 | Chr1 | 2174255 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr3 | 36136483 | 36140436 | 3953 |