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| Mutant Information |
|---|
| Mutant Name | FN4132-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4132-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21738075 | C-A | HET | ||
| SBS | Chr1 | 9408459 | G-A | HET | ||
| SBS | Chr10 | 1964620 | G-A | HET | ||
| SBS | Chr10 | 22905633 | G-T | Homo | ||
| SBS | Chr10 | 7409429 | G-T | HET | ||
| SBS | Chr10 | 948187 | C-G | HET | ||
| SBS | Chr10 | 948902 | A-T | HET | ||
| SBS | Chr11 | 15456460 | A-G | HET | ||
| SBS | Chr11 | 3120421 | T-G | Homo | ||
| SBS | Chr12 | 13189815 | T-G | HET | ||
| SBS | Chr12 | 20351923 | G-A | HET | ||
| SBS | Chr2 | 18961476 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g32090 |
| SBS | Chr2 | 26025536 | T-C | HET | ||
| SBS | Chr2 | 30592449 | C-G | HET | ||
| SBS | Chr2 | 31125555 | A-T | HET | ||
| SBS | Chr3 | 19315910 | A-G | Homo | ||
| SBS | Chr5 | 13893390 | C-G | HET | ||
| SBS | Chr5 | 29539 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g01006 |
| SBS | Chr5 | 5898988 | G-A | HET | ||
| SBS | Chr6 | 10146362 | C-T | Homo | ||
| SBS | Chr6 | 19582256 | G-A | HET | ||
| SBS | Chr6 | 24959563 | A-G | Homo | ||
| SBS | Chr6 | 27763989 | G-C | HET | ||
| SBS | Chr6 | 28052652 | A-G | HET | ||
| SBS | Chr7 | 26760017 | G-A | Homo | ||
| SBS | Chr9 | 13052172 | C-G | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 3478370 | 3478371 | 1 | |
| Deletion | Chr7 | 3514265 | 3514266 | 1 | |
| Deletion | Chr10 | 3791614 | 3791616 | 2 | |
| Deletion | Chr1 | 5045923 | 5045932 | 9 | |
| Deletion | Chr11 | 5287996 | 5287997 | 1 | |
| Deletion | Chr11 | 19974126 | 19974132 | 6 | |
| Deletion | Chr8 | 20203034 | 20203035 | 1 | |
| Deletion | Chr3 | 20394238 | 20394248 | 10 | LOC_Os03g36760 |
| Deletion | Chr9 | 21938888 | 21938897 | 9 | |
| Deletion | Chr11 | 26692048 | 26692049 | 1 | |
| Deletion | Chr3 | 27091865 | 27091867 | 2 | |
| Deletion | Chr2 | 28391485 | 28391494 | 9 | LOC_Os02g46560 |
| Deletion | Chr3 | 29621139 | 29621141 | 2 | |
| Deletion | Chr1 | 31674363 | 31674367 | 4 | LOC_Os01g55090 |
| Deletion | Chr1 | 40972359 | 40972370 | 11 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 27121476 | 27121481 | 6 | |
| Insertion | Chr4 | 10817734 | 10817734 | 1 | |
| Insertion | Chr4 | 12508144 | 12508216 | 73 | |
| Insertion | Chr5 | 2235162 | 2235162 | 1 | LOC_Os05g04730 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 20652166 | 21034319 | LOC_Os03g37260 |
| Inversion | Chr3 | 20652174 | 21034332 | LOC_Os03g37260 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4876032 | Chr3 | 4664731 | |
| Translocation | Chr11 | 7078606 | Chr7 | 17406960 | 2 |
| Translocation | Chr10 | 13825901 | Chr1 | 22856994 | 2 |
| Translocation | Chr10 | 13825908 | Chr1 | 22857355 | 2 |
| Translocation | Chr12 | 19447633 | Chr1 | 23373052 | |
| Translocation | Chr10 | 21246178 | Chr8 | 23629539 | LOC_Os10g39750 |