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| Mutant Information |
|---|
| Mutant Name | FN4133-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4133-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13908269 | A-G | Homo | ||
| SBS | Chr1 | 20787752 | T-C | Homo | ||
| SBS | Chr1 | 25243310 | C-T | HET | ||
| SBS | Chr1 | 26431975 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g46470 |
| SBS | Chr1 | 31597040 | G-A | HET | ||
| SBS | Chr1 | 41131294 | A-C | Homo | ||
| SBS | Chr10 | 7547874 | C-T | Homo | ||
| SBS | Chr11 | 19895368 | A-G | HET | ||
| SBS | Chr11 | 19959236 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g34110 |
| SBS | Chr11 | 19959239 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g34110 |
| SBS | Chr12 | 1977412 | A-G | HET | ||
| SBS | Chr3 | 11716420 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g20700 |
| SBS | Chr3 | 8947256 | C-A | HET | ||
| SBS | Chr4 | 10792584 | C-T | HET | ||
| SBS | Chr4 | 19614984 | A-C | HET | ||
| SBS | Chr5 | 26447745 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g45630 |
| SBS | Chr5 | 27737280 | C-T | Homo | ||
| SBS | Chr6 | 12560052 | G-A | Homo | SPLICE_SITE_ACCEPTOR | LOC_Os06g21730 |
| SBS | Chr6 | 19604700 | C-T | HET | ||
| SBS | Chr6 | 23795282 | G-A | HET | ||
| SBS | Chr6 | 28683788 | T-A | HET | ||
| SBS | Chr7 | 26129483 | T-C | HET | ||
| SBS | Chr7 | 29461578 | A-G | HET | ||
| SBS | Chr8 | 11012988 | C-T | Homo | ||
| SBS | Chr9 | 14840395 | T-C | HET | ||
| SBS | Chr9 | 4628983 | C-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1480730 | 1480824 | 94 | |
| Deletion | Chr4 | 2796001 | 2974000 | 177999 | 24 |
| Deletion | Chr9 | 3409287 | 3409289 | 2 | |
| Deletion | Chr12 | 3755367 | 3755380 | 13 | |
| Deletion | Chr1 | 5288603 | 5288605 | 2 | LOC_Os01g10130 |
| Deletion | Chr6 | 17013606 | 17013622 | 16 | |
| Deletion | Chr2 | 17567876 | 17567892 | 16 | |
| Deletion | Chr8 | 18333717 | 18333719 | 2 | |
| Deletion | Chr6 | 19629420 | 19629423 | 3 | |
| Deletion | Chr6 | 23673101 | 23673108 | 7 | |
| Deletion | Chr4 | 29968578 | 29968579 | 1 | |
| Deletion | Chr2 | 32207793 | 32207795 | 2 | |
| Deletion | Chr1 | 35353001 | 35408000 | 54999 | 9 |
| Deletion | Chr1 | 38998314 | 38998317 | 3 | LOC_Os01g67200 |
| Deletion | Chr1 | 39614271 | 39614273 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 27809054 | 27809054 | 1 | |
| Insertion | Chr10 | 16612027 | 16612027 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 2791020 | 2810483 | LOC_Os11g05930 |
| Inversion | Chr11 | 2791026 | 2810490 | LOC_Os11g05930 |
| Inversion | Chr1 | 35323861 | 35352106 | LOC_Os01g61044 |
| Inversion | Chr1 | 35323915 | 35403954 | 2 |
| Inversion | Chr1 | 37908088 | 37908553 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 2797930 | Chr3 | 29747818 | LOC_Os03g51880 |
| Translocation | Chr11 | 12669630 | Chr3 | 25454802 | LOC_Os11g22030 |
| Translocation | Chr12 | 18164171 | Chr2 | 15415839 | LOC_Os02g26240 |
| Translocation | Chr11 | 23740972 | Chr7 | 24849957 | LOC_Os07g41470 |
| Translocation | Chr11 | 23833225 | Chr4 | 13589832 |