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| Mutant Information |
|---|
| Mutant Name | FN4134-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4134-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12838372 | G-A | Homo | ||
| SBS | Chr1 | 13176878 | G-C | Homo | ||
| SBS | Chr1 | 18852304 | A-G | Homo | ||
| SBS | Chr10 | 182440 | C-T | Homo | ||
| SBS | Chr11 | 29008127 | T-A | HET | ||
| SBS | Chr12 | 10528786 | G-A | HET | ||
| SBS | Chr12 | 8263938 | A-T | HET | ||
| SBS | Chr2 | 12694695 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g21390 |
| SBS | Chr2 | 19216545 | C-T | Homo | ||
| SBS | Chr2 | 2425830 | C-T | HET | ||
| SBS | Chr2 | 31730956 | C-T | HET | ||
| SBS | Chr3 | 17954274 | G-T | Homo | ||
| SBS | Chr3 | 29723138 | G-A | Homo | ||
| SBS | Chr3 | 3241584 | T-C | Homo | ||
| SBS | Chr3 | 7946298 | G-A | Homo | ||
| SBS | Chr4 | 11534882 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20610 |
| SBS | Chr4 | 11614713 | G-A | HET | ||
| SBS | Chr5 | 1205568 | G-A | HET | ||
| SBS | Chr5 | 2579053 | G-A | HET | ||
| SBS | Chr6 | 1416759 | T-A | HET | ||
| SBS | Chr6 | 17364850 | G-A | Homo | ||
| SBS | Chr6 | 20376301 | G-T | Homo | ||
| SBS | Chr6 | 24377401 | G-A | Homo | ||
| SBS | Chr6 | 5132312 | G-A | HET | ||
| SBS | Chr7 | 4686501 | C-T | Homo | ||
| SBS | Chr8 | 15218467 | G-A | HET | ||
| SBS | Chr8 | 27746761 | C-T | HET | ||
| SBS | Chr8 | 28427283 | C-T | HET | ||
| SBS | Chr9 | 2208603 | T-C | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1007544 | 1007553 | 9 | |
| Deletion | Chr4 | 2902296 | 2902306 | 10 | LOC_Os04g05680 |
| Deletion | Chr7 | 5792531 | 5792545 | 14 | |
| Deletion | Chr10 | 6536001 | 6582000 | 45999 | 5 |
| Deletion | Chr10 | 6837001 | 6850000 | 12999 | 2 |
| Deletion | Chr10 | 6856001 | 6914000 | 57999 | 6 |
| Deletion | Chr8 | 10524507 | 10524515 | 8 | |
| Deletion | Chr2 | 10773748 | 10773753 | 5 | |
| Deletion | Chr6 | 10889286 | 10889288 | 2 | LOC_Os06g19130 |
| Deletion | Chr6 | 14991600 | 14991602 | 2 | LOC_Os06g25660 |
| Deletion | Chr8 | 16943061 | 16943066 | 5 | |
| Deletion | Chr9 | 17575865 | 17575866 | 1 | |
| Deletion | Chr3 | 17790813 | 17790814 | 1 | |
| Deletion | Chr1 | 18617621 | 18617629 | 8 | |
| Deletion | Chr3 | 19614001 | 19724000 | 109999 | 18 |
| Deletion | Chr6 | 19823170 | 19823171 | 1 | |
| Deletion | Chr6 | 24195412 | 24195415 | 3 | LOC_Os06g40580 |
| Deletion | Chr5 | 25429885 | 25429887 | 2 | |
| Deletion | Chr3 | 29617619 | 29617625 | 6 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 25301588 | 25301996 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 31 | Chr1 | 1116 | |
| Translocation | Chr10 | 21768 | Chr2 | 32744124 | |
| Translocation | Chr10 | 21926 | Chr2 | 32745170 | |
| Translocation | Chr8 | 2766698 | Chr3 | 7276973 | LOC_Os03g13450 |
| Translocation | Chr8 | 3596051 | Chr3 | 7276732 | LOC_Os03g13450 |
| Translocation | Chr6 | 10800797 | Chr4 | 16768933 |