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| Mutant Information |
|---|
| Mutant Name | FN4138-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4138-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12257844 | G-A | Homo | ||
| SBS | Chr1 | 28248484 | T-C | HET | ||
| SBS | Chr10 | 14863128 | C-T | HET | ||
| SBS | Chr10 | 20074557 | A-T | Homo | ||
| SBS | Chr10 | 20569570 | T-C | Homo | ||
| SBS | Chr10 | 4269040 | C-G | HET | ||
| SBS | Chr10 | 5906641 | A-C | HET | ||
| SBS | Chr12 | 12696290 | T-A | Homo | ||
| SBS | Chr12 | 16162396 | C-A | Homo | ||
| SBS | Chr12 | 24050169 | G-A | HET | ||
| SBS | Chr12 | 25011739 | G-A | Homo | ||
| SBS | Chr12 | 26423445 | G-A | Homo | ||
| SBS | Chr12 | 4174154 | T-C | Homo | ||
| SBS | Chr3 | 13559330 | C-T | HET | ||
| SBS | Chr3 | 14053017 | C-T | HET | ||
| SBS | Chr3 | 3490798 | G-C | HET | ||
| SBS | Chr3 | 35917314 | T-G | HET | ||
| SBS | Chr4 | 10142660 | G-T | HET | ||
| SBS | Chr4 | 10578278 | G-T | HET | ||
| SBS | Chr4 | 13468535 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23550 |
| SBS | Chr4 | 15199490 | T-C | HET | ||
| SBS | Chr4 | 2956523 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05760 |
| SBS | Chr5 | 14637454 | C-A | HET | ||
| SBS | Chr5 | 20201438 | T-G | HET | ||
| SBS | Chr7 | 11168588 | C-T | HET | ||
| SBS | Chr7 | 14419282 | A-T | HET | ||
| SBS | Chr7 | 15542326 | A-G | HET | ||
| SBS | Chr8 | 27509308 | T-C | Homo | ||
| SBS | Chr9 | 14088255 | G-A | HET | ||
| SBS | Chr9 | 22635926 | C-T | HET |
Deletions: 6
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 13153002 | 13153010 | 9 | |
| Insertion | Chr12 | 21719485 | 21719564 | 80 | |
| Insertion | Chr12 | 8943542 | 8943545 | 4 | |
| Insertion | Chr3 | 16845954 | 16845967 | 14 | LOC_Os03g29560 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 26006767 | 26470475 | LOC_Os06g43270 |
| Inversion | Chr6 | 26007736 | 26470476 | LOC_Os06g43280 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 3344905 | Chr6 | 30639374 | LOC_Os06g50620 |
| Translocation | Chr7 | 9604616 | Chr3 | 25732270 | |
| Translocation | Chr12 | 11834260 | Chr3 | 15244304 | 2 |
| Translocation | Chr8 | 12109439 | Chr2 | 9635747 | LOC_Os08g20180 |
| Translocation | Chr7 | 14356438 | Chr6 | 14832848 | 2 |
| Translocation | Chr8 | 17268953 | Chr4 | 4090877 | |
| Translocation | Chr3 | 24819508 | Chr1 | 2790451 | LOC_Os01g05820 |