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| Mutant Information |
|---|
| Mutant Name | FN4139-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4139-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15616056 | G-T | Homo | ||
| SBS | Chr1 | 15781915 | G-C | HET | ||
| SBS | Chr10 | 20431877 | A-C | HET | ||
| SBS | Chr10 | 7672222 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g14130 |
| SBS | Chr11 | 15751770 | A-G | Homo | ||
| SBS | Chr11 | 2109308 | G-A | Homo | ||
| SBS | Chr12 | 15046857 | A-T | HET | ||
| SBS | Chr12 | 17048046 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28830 |
| SBS | Chr12 | 24855683 | G-T | HET | ||
| SBS | Chr12 | 24855684 | C-T | HET | ||
| SBS | Chr12 | 5108570 | C-T | HET | ||
| SBS | Chr12 | 8965960 | G-A | HET | ||
| SBS | Chr2 | 4082586 | T-A | HET | ||
| SBS | Chr3 | 21553602 | C-T | Homo | ||
| SBS | Chr3 | 26595825 | C-T | HET | ||
| SBS | Chr4 | 17231388 | G-A | HET | ||
| SBS | Chr4 | 7960571 | G-A | HET | ||
| SBS | Chr6 | 31047075 | T-A | HET | ||
| SBS | Chr7 | 1248260 | T-A | HET | ||
| SBS | Chr7 | 25218545 | C-T | HET | ||
| SBS | Chr8 | 27182221 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g43010 |
| SBS | Chr8 | 5467800 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g09430 |
| SBS | Chr9 | 4639493 | T-A | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 2889316 | 2889319 | 3 | |
| Deletion | Chr11 | 3546366 | 3546370 | 4 | |
| Deletion | Chr5 | 3593829 | 3593840 | 11 | LOC_Os05g06860 |
| Deletion | Chr5 | 4211814 | 4211815 | 1 | LOC_Os05g07820 |
| Deletion | Chr11 | 5138109 | 5138135 | 26 | |
| Deletion | Chr2 | 6786392 | 6786393 | 1 | |
| Deletion | Chr11 | 8033080 | 8033083 | 3 | LOC_Os11g14310 |
| Deletion | Chr1 | 12905673 | 12905691 | 18 | |
| Deletion | Chr9 | 13192918 | 13192921 | 3 | |
| Deletion | Chr9 | 14453745 | 14453754 | 9 | |
| Deletion | Chr1 | 15689541 | 15689545 | 4 | |
| Deletion | Chr5 | 17192069 | 17192074 | 5 | |
| Deletion | Chr5 | 18810436 | 18810443 | 7 | |
| Deletion | Chr5 | 22089731 | 22089732 | 1 | |
| Deletion | Chr6 | 27436184 | 27436194 | 10 | |
| Deletion | Chr1 | 30784062 | 30784070 | 8 | |
| Deletion | Chr3 | 31742665 | 31742666 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 21861348 | 21861355 | 8 | LOC_Os12g35880 |
| Insertion | Chr4 | 2610506 | 2610506 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 1724115 | 1724405 | LOC_Os12g04110 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 8306270 | Chr2 | 8881850 | 2 |
| Translocation | Chr11 | 8307064 | Chr2 | 8881855 | 2 |
| Translocation | Chr7 | 10511352 | Chr3 | 23252800 | |
| Translocation | Chr8 | 15255368 | Chr6 | 14058712 | |
| Translocation | Chr8 | 18071305 | Chr5 | 17231399 | 2 |
| Translocation | Chr4 | 18466156 | Chr3 | 28970458 | LOC_Os03g50740 |