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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8615358	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g15370
SBS	Chr11	20860255	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g35580
SBS	Chr11	23184080	G-C	HET
SBS	Chr11	2663525	G-T	HET
SBS	Chr11	2663526	C-T	HET
SBS	Chr12	13572535	T-C	Homo
SBS	Chr12	24353562	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g39510
SBS	Chr12	26792571	G-T	Homo
SBS	Chr2	31978552	G-T	Homo
SBS	Chr2	32013534	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g52280
SBS	Chr2	3959736	T-A	Homo
SBS	Chr2	6193169	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr3	13971504	A-T	HET
SBS	Chr3	21415930	C-A	HET
SBS	Chr3	22817260	T-A	HET
SBS	Chr3	22817261	G-T	HET
SBS	Chr3	22817262	G-T	HET
SBS	Chr3	34300169	T-C	Homo
SBS	Chr4	13164060	T-C	HET
SBS	Chr5	28855163	T-C	HET
SBS	Chr5	28998060	T-A	HET
SBS	Chr5	3354739	G-T	HET
SBS	Chr6	17772297	G-A	Homo
SBS	Chr6	19878671	G-A	Homo
SBS	Chr6	22013021	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g37290
SBS	Chr6	6501735	G-A	Homo
SBS	Chr7	19176446	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g32260
SBS	Chr7	28833235	G-T	Homo	STOP_GAINED	LOC_Os07g48270
SBS	Chr8	19219605	T-A	HET
SBS	Chr8	9436410	G-A	HET
SBS	Chr9	1907374	G-A	Homo

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	786373	786386	13
Deletion	Chr11	11725375	11725376	1	LOC_Os11g20290
Deletion	Chr10	12947704	12947705	1
Deletion	Chr7	19259107	19259110	3	LOC_Os07g32400
Deletion	Chr12	26741970	26741973	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34117933	34117934	2
Insertion	Chr11	21411201	21411202	2
Insertion	Chr11	2938353	2938353	1
Insertion	Chr2	8031873	8031873	1
Insertion	Chr5	15980109	15980109	1	LOC_Os05g27480
Insertion	Chr8	12575994	12575994	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10339326	10865580
Inversion	Chr4	10339327	10865588

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1569325	Chr6	30771838	2
Translocation	Chr8	1569437	Chr6	30771832	2
Translocation	Chr10	2899452	Chr4	30727677
Translocation	Chr10	2899901	Chr4	30727672
Translocation	Chr6	7521744	Chr3	25342952	LOC_Os03g44900
Translocation	Chr6	10920388	Chr3	3480015	LOC_Os03g06880
Translocation	Chr6	10921198	Chr3	3479870	LOC_Os03g06880
Translocation	Chr4	13643875	Chr3	3480014	2
Translocation	Chr4	13648126	Chr3	3479868	2
Translocation	Chr3	29627042	Chr1	2484867	LOC_Os03g51710

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