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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42904916	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g74100
SBS	Chr2	3673998	C-T	Homo
SBS	Chr2	9522941	C-T	HET
SBS	Chr3	10248367	C-G	HET
SBS	Chr3	10586292	A-G	HET
SBS	Chr3	13242872	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22900
SBS	Chr3	16858854	C-A	HET
SBS	Chr3	25137089	C-A	HET
SBS	Chr4	26056705	C-T	HET	STOP_GAINED	LOC_Os04g43950
SBS	Chr4	28615737	G-A	HET
SBS	Chr5	7354574	G-A	HET
SBS	Chr6	14491126	C-T	HET
SBS	Chr6	23737187	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g39912
SBS	Chr6	23737194	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g39912
SBS	Chr6	23783998	G-A	HET
SBS	Chr7	6632485	T-A	HET
SBS	Chr7	12864548	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g22800
SBS	Chr7	20152943	C-T	Homo
SBS	Chr7	21216384	C-A	Homo
SBS	Chr7	28348821	G-A	HET
SBS	Chr8	3374949	C-T	HET
SBS	Chr8	4073321	G-A	HET
SBS	Chr9	8746134	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14720
SBS	Chr10	15539385	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g29920
SBS	Chr10	16841109	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32060
SBS	Chr10	18404696	G-A	HET	STOP_GAINED	LOC_Os10g34500
SBS	Chr11	11472554	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19930
SBS	Chr11	15792112	C-A	HET
SBS	Chr11	26963654	A-T	HET
SBS	Chr11	28517846	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47410

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	106291	106310	19	LOC_Os06g01100
Deletion	Chr7	1146614	1146628	14
Deletion	Chr4	4651428	4651429	1
Deletion	Chr4	5406611	5406612	1
Deletion	Chr2	6830575	6830577	2
Deletion	Chr1	8968001	9010000	41999	8
Deletion	Chr12	19857840	19857932	92
Deletion	Chr12	22886523	22886535	12
Deletion	Chr1	28686001	28736000	49999	9
Deletion	Chr11	28740862	28740863	1
Deletion	Chr7	29548060	29548061	1	LOC_Os07g49330
Deletion	Chr2	29573841	29573843	2
Deletion	Chr1	30119758	30119759	1
Deletion	Chr1	30611271	30611272	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	1506963	1506963	1
Insertion	Chr3	20637990	20637993	4
Insertion	Chr8	12235476	12235476	1
Insertion	Chr8	23317908	23317908	1
Insertion	Chr7	7817833	7817833	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18467572	18476334

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	11660360	Chr6	7698605	LOC_Os06g13860
Translocation	Chr11	17890250	Chr9	4630672
Translocation	Chr11	17890572	Chr2	8032374	LOC_Os11g30720
Translocation	Chr11	21128564	Chr1	19235230
Translocation	Chr10	22089192	Chr3	18467611

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