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Mutant Information

Mutant Name	FN4144-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4144-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13169898	T-C	HET
SBS	Chr12	16335473	T-A	HET
SBS	Chr12	2670918	G-A	HET
SBS	Chr12	8270906	T-G	HET
SBS	Chr2	17764998	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29870
SBS	Chr2	32453599	A-T	HET
SBS	Chr3	14653470	G-A	Homo
SBS	Chr3	28057138	C-T	HET
SBS	Chr3	29387144	C-T	Homo
SBS	Chr3	34281622	T-A	Homo
SBS	Chr4	21507473	G-A	HET
SBS	Chr6	15128792	G-A	HET
SBS	Chr6	20045	C-A	Homo	SPLICE_SITE_DONOR	LOC_Os06g01040
SBS	Chr7	4663698	G-A	HET
SBS	Chr8	1049372	C-G	Homo
SBS	Chr8	12696083	C-G	Homo
SBS	Chr8	15638939	T-C	Homo
SBS	Chr9	5639964	C-T	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	29551	29559	8
Deletion	Chr1	2996905	2996908	3	LOC_Os01g06300
Deletion	Chr4	7633806	7633808	2
Deletion	Chr8	8364104	8364107	3
Deletion	Chr3	9623001	9745000	121999	25
Deletion	Chr2	13341930	13341931	1
Deletion	Chr5	18365805	18365809	4
Deletion	Chr11	23371576	23371577	1	LOC_Os11g39250
Deletion	Chr3	31745774	31745795	21	LOC_Os03g55750

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25435253	25435253	1
Insertion	Chr10	12592047	12592048	2
Insertion	Chr11	21228297	21228297	1
Insertion	Chr11	22130893	22131018	126
Insertion	Chr12	24332195	24332196	2
Insertion	Chr3	21463072	21463121	50
Insertion	Chr4	2681953	2681953	1
Insertion	Chr6	23048216	23048217	2
Insertion	Chr7	232219	232219	1

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4028202	4031196
Inversion	Chr3	9507849	9625905	2
Inversion	Chr3	9512308	9746602	LOC_Os03g17540
Inversion	Chr9	9544644	9730396	LOC_Os09g15639
Inversion	Chr9	9563637	10142850	LOC_Os09g16530
Inversion	Chr3	9622707	10538699	LOC_Os03g17270
Inversion	Chr3	9622713	10538702	LOC_Os03g17270
Inversion	Chr6	10393086	10764581	LOC_Os06g18940
Inversion	Chr6	10393090	10764831	LOC_Os06g18940
Inversion	Chr6	13644744	14610222
Inversion	Chr6	13644745	14610219

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5212055	Chr1	26217213	2
Translocation	Chr5	5344900	Chr3	12246245	LOC_Os03g21419
Translocation	Chr8	6761557	Chr7	6428310	LOC_Os07g11640
Translocation	Chr6	10764817	Chr5	4030829	LOC_Os06g18940
Translocation	Chr8	17769075	Chr2	13477750	2
Translocation	Chr11	18279665	Chr3	29622495
Translocation	Chr12	21538526	Chr2	5909922	LOC_Os12g35410
Translocation	Chr6	23039343	Chr3	11869185	LOC_Os06g38810
Translocation	Chr8	23098575	Chr4	22740556