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| Mutant Information |
|---|
| Mutant Name | FN4145-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4145-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32884890 | C-A | HET | ||
| SBS | Chr1 | 6458180 | C-G | HET | ||
| SBS | Chr1 | 6538405 | C-T | HET | ||
| SBS | Chr10 | 15762365 | C-A | HET | ||
| SBS | Chr10 | 21268472 | G-A | Homo | ||
| SBS | Chr12 | 17149081 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28990 |
| SBS | Chr12 | 17632302 | C-G | HET | ||
| SBS | Chr2 | 33791337 | C-T | Homo | ||
| SBS | Chr3 | 9358004 | G-A | Homo | ||
| SBS | Chr4 | 10686241 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g19240 |
| SBS | Chr4 | 27213297 | T-G | HET | ||
| SBS | Chr4 | 33031319 | G-A | HET | ||
| SBS | Chr4 | 474345 | G-C | Homo | ||
| SBS | Chr5 | 15111316 | T-C | HET | ||
| SBS | Chr5 | 1638972 | G-A | Homo | ||
| SBS | Chr5 | 20639343 | A-G | Homo | ||
| SBS | Chr5 | 5934885 | C-A | HET | ||
| SBS | Chr6 | 12329859 | C-T | Homo | ||
| SBS | Chr6 | 28515411 | T-G | Homo | ||
| SBS | Chr8 | 1384324 | C-T | Homo | ||
| SBS | Chr8 | 22588670 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g35820 |
| SBS | Chr8 | 22811119 | C-T | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 3990354 | 3990362 | 8 | |
| Deletion | Chr10 | 5681291 | 5681293 | 2 | |
| Deletion | Chr8 | 8470134 | 8470135 | 1 | |
| Deletion | Chr6 | 8864923 | 8864924 | 1 | |
| Deletion | Chr12 | 12046496 | 12046497 | 1 | |
| Deletion | Chr1 | 14879460 | 14879470 | 10 | |
| Deletion | Chr6 | 15437108 | 15437262 | 154 | |
| Deletion | Chr11 | 15777117 | 15777122 | 5 | LOC_Os11g27410 |
| Deletion | Chr4 | 19920778 | 19920779 | 1 | |
| Deletion | Chr1 | 20181202 | 20181203 | 1 | |
| Deletion | Chr4 | 21748988 | 21748994 | 6 | |
| Deletion | Chr8 | 22587393 | 22587400 | 7 | |
| Deletion | Chr2 | 24197819 | 24197822 | 3 | |
| Deletion | Chr7 | 24327392 | 24327393 | 1 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 11626172 | 11626200 | 29 | |
| Insertion | Chr3 | 31079944 | 31079944 | 1 | |
| Insertion | Chr4 | 1935604 | 1935604 | 1 | |
| Insertion | Chr6 | 218544 | 218546 | 3 | |
| Insertion | Chr6 | 25817901 | 25817901 | 1 | |
| Insertion | Chr7 | 13576897 | 13576897 | 1 | LOC_Os07g23980 |
| Insertion | Chr8 | 16898079 | 16898176 | 98 | |
| Insertion | Chr9 | 11164488 | 11164491 | 4 |
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 1197084 | Chr1 | 2512749 | LOC_Os04g02960 |
| Translocation | Chr4 | 3844939 | Chr3 | 13382505 | |
| Translocation | Chr12 | 9237401 | Chr7 | 2102469 | 2 |
| Translocation | Chr11 | 11687616 | Chr2 | 4955245 | 2 |
| Translocation | Chr11 | 11698607 | Chr2 | 4955245 | 2 |
| Translocation | Chr8 | 15935224 | Chr3 | 12661061 |