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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13145976	A-T	HET
SBS	Chr1	215482	G-A	Homo
SBS	Chr10	3608406	C-A	HET
SBS	Chr11	12293964	G-C	HET
SBS	Chr11	1256089	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03340
SBS	Chr11	2177356	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g05020
SBS	Chr11	6417666	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g11540
SBS	Chr11	946677	C-T	Homo
SBS	Chr12	9235332	G-T	HET
SBS	Chr2	10052329	A-G	Homo
SBS	Chr2	14623704	T-C	Homo
SBS	Chr2	28945722	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g47410
SBS	Chr2	29285791	T-A	HET
SBS	Chr2	4294285	T-G	HET
SBS	Chr3	29861801	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52040
SBS	Chr4	13927923	C-G	HET
SBS	Chr4	29590552	G-A	HET
SBS	Chr4	9652326	C-T	HET
SBS	Chr5	20847974	A-G	HET
SBS	Chr5	21004613	A-G	HET
SBS	Chr5	28629621	T-G	HET
SBS	Chr5	5354540	A-T	HET
SBS	Chr7	11759395	A-T	Homo
SBS	Chr7	15482125	C-T	HET
SBS	Chr7	25223198	C-A	HET
SBS	Chr8	20693145	T-C	HET
SBS	Chr8	23496258	C-T	HET
SBS	Chr9	8330620	G-A	HET

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1697435	1697436	1
Deletion	Chr9	2806869	2806870	1
Deletion	Chr8	5398565	5398573	8
Deletion	Chr8	7169324	7169325	1
Deletion	Chr7	7641097	7641103	6
Deletion	Chr1	11342874	11342877	3
Deletion	Chr8	11631622	11631623	1
Deletion	Chr7	13394574	13394576	2
Deletion	Chr12	16444986	16444987	1
Deletion	Chr1	17935880	17935881	1
Deletion	Chr6	18695169	18695170	1
Deletion	Chr7	19381344	19381345	1
Deletion	Chr6	19511545	19511546	1
Deletion	Chr9	20108659	20108662	3
Deletion	Chr11	22365001	22372000	6999	LOC_Os11g37780
Deletion	Chr7	22995226	22995228	2
Deletion	Chr4	23821462	23821464	2
Deletion	Chr2	25256256	25256260	4
Deletion	Chr3	26288499	26288500	1
Deletion	Chr3	26740344	26740349	5
Deletion	Chr4	29265001	29357000	91999	12
Deletion	Chr1	43222899	43222900	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8139732	8139733	2
Insertion	Chr2	12703025	12703025	1
Insertion	Chr3	26262907	26262908	2
Insertion	Chr8	144604	144604	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	959683	1024663	LOC_Os11g02950
Inversion	Chr7	17942020	17953498

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9082935	Chr1	10107456	LOC_Os11g16420
Translocation	Chr11	9082941	Chr1	10106748	LOC_Os11g16420
Translocation	Chr6	14189371	Chr1	34370177
Translocation	Chr9	18209124	Chr3	22112821	2
Translocation	Chr9	18210330	Chr3	22112823	2
Translocation	Chr11	22364470	Chr1	26853675
Translocation	Chr11	28034854	Chr10	1923798	LOC_Os10g04140

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