Search Results
| Mutant Information |
|---|
| Mutant Name | FN4147-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4147-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10846718 | T-G | HET | ||
| SBS | Chr1 | 11052168 | G-C | HET | ||
| SBS | Chr1 | 11841874 | A-T | HET | ||
| SBS | Chr1 | 17362303 | C-T | HET | ||
| SBS | Chr2 | 11717785 | G-A | Homo | ||
| SBS | Chr2 | 30939500 | G-C | HET | ||
| SBS | Chr2 | 35125061 | G-A | HET | ||
| SBS | Chr3 | 1477096 | G-T | HET | ||
| SBS | Chr3 | 10015394 | C-T | Homo | ||
| SBS | Chr4 | 6607265 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12040 |
| SBS | Chr4 | 28848539 | C-T | Homo | ||
| SBS | Chr5 | 244010 | G-A | Homo | ||
| SBS | Chr5 | 12140692 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g20710 |
| SBS | Chr5 | 26333603 | T-C | Homo | ||
| SBS | Chr5 | 26440677 | A-G | HET | ||
| SBS | Chr6 | 8615563 | T-G | Homo | ||
| SBS | Chr6 | 23796328 | T-G | HET | ||
| SBS | Chr7 | 2076867 | T-A | HET | ||
| SBS | Chr7 | 19974256 | G-A | HET | ||
| SBS | Chr7 | 26112277 | C-T | HET | ||
| SBS | Chr8 | 12784590 | A-G | HET | ||
| SBS | Chr8 | 21420844 | T-C | HET | ||
| SBS | Chr8 | 21585394 | G-A | HET | ||
| SBS | Chr10 | 5218310 | T-A | Homo | ||
| SBS | Chr10 | 10620776 | C-T | HET | ||
| SBS | Chr10 | 20250464 | C-A | HET | ||
| SBS | Chr11 | 5128697 | C-T | Homo | ||
| SBS | Chr11 | 5128699 | G-A | Homo | ||
| SBS | Chr11 | 15125603 | C-T | Homo | ||
| SBS | Chr12 | 446617 | A-T | Homo | ||
| SBS | Chr12 | 11023990 | G-C | Homo | ||
| SBS | Chr12 | 13289559 | G-A | Homo | ||
| SBS | Chr12 | 13631919 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g23990 |
| SBS | Chr12 | 20365985 | T-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 139831 | 139839 | 8 | |
| Deletion | Chr2 | 530066 | 530068 | 2 | |
| Deletion | Chr10 | 5364001 | 5555000 | 190999 | 21 |
| Deletion | Chr6 | 5880959 | 5880964 | 5 | |
| Deletion | Chr3 | 6367890 | 6367896 | 6 | |
| Deletion | Chr8 | 10714676 | 10714677 | 1 | |
| Deletion | Chr1 | 11817001 | 11826000 | 8999 | 2 |
| Deletion | Chr2 | 13194890 | 13194891 | 1 | |
| Deletion | Chr9 | 13351881 | 13351891 | 10 | |
| Deletion | Chr4 | 14235186 | 14235195 | 9 | LOC_Os04g24780 |
| Deletion | Chr7 | 23816151 | 23816159 | 8 | LOC_Os07g39740 |
| Deletion | Chr3 | 26932203 | 26932205 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 29199100 | 29199101 | 2 | |
| Insertion | Chr9 | 19195501 | 19195525 | 25 | |
| Insertion | Chr11 | 1476412 | 1476413 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 5269342 | 5360222 | |
| Inversion | Chr10 | 5353715 | 5361037 | LOC_Os10g09890 |
| Inversion | Chr12 | 13179333 | 13527709 | |
| Inversion | Chr12 | 13179363 | 13527755 | |
| Inversion | Chr7 | 18992785 | 19470845 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 4931784 | Chr1 | 185281 | |
| Translocation | Chr11 | 4932076 | Chr1 | 27452282 | 2 |
| Translocation | Chr11 | 21139127 | Chr8 | 18706912 | LOC_Os11g35970 |
| Translocation | Chr7 | 22898509 | Chr3 | 14611506 | |
| Translocation | Chr12 | 24329802 | Chr7 | 3912850 | |
| Translocation | Chr11 | 27773761 | Chr8 | 4172941 | LOC_Os08g07430 |