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Mutant Information

Mutant Name	FN415-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN415-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1206174	C-T	HET	INTERGENIC
SBS	Chr1	20375480	C-T	HOMO	INTERGENIC
SBS	Chr1	20375481	A-T	HOMO	INTERGENIC
SBS	Chr12	13640562	T-G	HOMO	INTERGENIC
SBS	Chr12	16309391	C-T	HOMO	INTERGENIC
SBS	Chr3	18783700	A-T	HET	SYNONYMOUS_CODING
SBS	Chr3	21810632	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39250
SBS	Chr3	28430929	A-G	HET	INTERGENIC
SBS	Chr3	3547530	G-A	HET	INTRON
SBS	Chr4	10355102	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	1474122	C-T	HOMO	INTERGENIC
SBS	Chr5	20635532	G-A	HET	INTERGENIC
SBS	Chr7	12460461	T-C	HET	INTERGENIC
SBS	Chr7	15645573	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27010
SBS	Chr7	16047141	G-A	HET	INTERGENIC
SBS	Chr8	19009014	T-C	HET	INTERGENIC
SBS	Chr8	27105214	G-A	HET	INTRON
SBS	Chr8	8754513	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14560

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1316454	1316457	3
Deletion	Chr3	2025278	2025280	2
Deletion	Chr12	2390209	2390210	1
Deletion	Chr3	3207443	3207445	2	LOC_Os03g06410
Deletion	Chr7	4220656	4220671	15	LOC_Os07g08270
Deletion	Chr6	6649208	6649216	8
Deletion	Chr2	7398665	7398666	1
Deletion	Chr12	11936429	11936430	1
Deletion	Chr3	18033203	18033204	1
Deletion	Chr11	27625989	27625993	4
Deletion	Chr3	28408615	28408616	1
Deletion	Chr6	31094318	31094319	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	17953013	17953013	1
Insertion	Chr2	22324085	22324085	1
Insertion	Chr2	31693640	31693640	1
Insertion	Chr6	12183968	12183969	2
Insertion	Chr7	5562716	5562717	2
Insertion	Chr9	7334080	7334082	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	10775076	10775266	LOC_Os05g18604
Inversion	Chr1	24892694	25045610	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4838478	Chr4	18124161	LOC_Os04g30370
Translocation	Chr5	22550053	Chr3	23592966
Translocation	Chr11	25651419	Chr1	25064693