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Mutant Information |
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Mutant Name | FN4151-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4151-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 39
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13115757 | C-T | HET | ||
SBS | Chr1 | 1765923 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04070 |
SBS | Chr1 | 28813921 | C-T | HET | ||
SBS | Chr1 | 32952566 | T-A | Homo | ||
SBS | Chr1 | 3769537 | G-T | HET | ||
SBS | Chr1 | 42104148 | T-A | Homo | ||
SBS | Chr10 | 7974625 | G-A | HET | ||
SBS | Chr11 | 1903696 | G-T | HET | ||
SBS | Chr11 | 2097945 | A-T | HET | ||
SBS | Chr11 | 2316180 | G-A | HET | ||
SBS | Chr11 | 27187882 | C-A | HET | ||
SBS | Chr12 | 10818097 | C-T | HET | ||
SBS | Chr12 | 11355257 | C-T | HET | ||
SBS | Chr2 | 25600843 | C-G | HET | ||
SBS | Chr3 | 1067770 | C-A | HET | ||
SBS | Chr3 | 20053998 | C-T | Homo | ||
SBS | Chr3 | 25941982 | G-T | HET | ||
SBS | Chr3 | 26600540 | T-A | HET | ||
SBS | Chr3 | 31737279 | G-A | HET | ||
SBS | Chr3 | 32364516 | A-T | HET | ||
SBS | Chr3 | 32774239 | C-T | HET | ||
SBS | Chr3 | 36204771 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g64070 |
SBS | Chr4 | 1191125 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g02960 |
SBS | Chr4 | 13744465 | A-G | HET | ||
SBS | Chr4 | 2715390 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05420 |
SBS | Chr4 | 8656214 | G-A | HET | ||
SBS | Chr5 | 12270422 | C-A | Homo | ||
SBS | Chr5 | 129536 | C-A | HET | ||
SBS | Chr5 | 19110723 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32630 |
SBS | Chr5 | 19110731 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32630 |
SBS | Chr5 | 20576534 | G-A | HET | ||
SBS | Chr5 | 22096465 | C-A | HET | ||
SBS | Chr6 | 1487724 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g03760 |
SBS | Chr8 | 17760231 | G-A | Homo | ||
SBS | Chr8 | 22586564 | C-T | Homo | ||
SBS | Chr8 | 22612676 | G-A | Homo | ||
SBS | Chr9 | 1627212 | G-T | Homo | ||
SBS | Chr9 | 21359709 | A-T | HET | ||
SBS | Chr9 | 3643453 | A-G | Homo |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 194174 | 194178 | 4 | |
Deletion | Chr7 | 1128519 | 1128520 | 1 | |
Deletion | Chr9 | 1626454 | 1626459 | 5 | |
Deletion | Chr2 | 2072639 | 2072644 | 5 | |
Deletion | Chr1 | 6092387 | 6092388 | 1 | |
Deletion | Chr11 | 7374420 | 7374425 | 5 | |
Deletion | Chr3 | 7901626 | 7901633 | 7 | LOC_Os03g14560 |
Deletion | Chr12 | 11615792 | 11615802 | 10 | |
Deletion | Chr3 | 13975469 | 13975474 | 5 | |
Deletion | Chr2 | 18912517 | 18912518 | 1 | |
Deletion | Chr5 | 20706741 | 20706746 | 5 | |
Deletion | Chr4 | 22587528 | 22587533 | 5 | LOC_Os04g37960 |
Deletion | Chr7 | 22929661 | 22929671 | 10 | |
Deletion | Chr7 | 26181760 | 26181771 | 11 | LOC_Os07g43750 |
Deletion | Chr12 | 27302713 | 27302718 | 5 | |
Deletion | Chr1 | 31393361 | 31393367 | 6 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 15695868 | 15695869 | 2 | |
Insertion | Chr6 | 1049717 | 1049717 | 1 |
Inversions: 6
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 5176809 | 5244464 | LOC_Os09g09600 |
Inversion | Chr9 | 5176812 | 5244463 | LOC_Os09g09600 |
Inversion | Chr12 | 8972518 | 9746482 | LOC_Os12g15700 |
Inversion | Chr12 | 9746492 | 10397036 | |
Inversion | Chr8 | 9842461 | 10701761 | LOC_Os08g16140 |
Inversion | Chr8 | 9842464 | 10701769 | LOC_Os08g16140 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 3357287 | Chr2 | 26818632 | |
Translocation | Chr8 | 3358704 | Chr2 | 26818640 | |
Translocation | Chr6 | 5338299 | Chr1 | 25073977 | 2 |
Translocation | Chr12 | 6160125 | Chr9 | 20504294 | |
Translocation | Chr11 | 11720698 | Chr9 | 10245949 | |
Translocation | Chr11 | 19803528 | Chr5 | 17883158 | LOC_Os11g33450 |