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| Mutant Information |
|---|
| Mutant Name | FN4152-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4152-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr11 | 11257689 | G-A | Homo | ||
| SBS | Chr11 | 12064792 | G-T | HET | ||
| SBS | Chr11 | 5692424 | G-A | HET | ||
| SBS | Chr2 | 16534227 | T-C | HET | ||
| SBS | Chr2 | 29225842 | C-T | Homo | ||
| SBS | Chr3 | 13985699 | T-C | HET | ||
| SBS | Chr3 | 21439055 | T-C | HET | ||
| SBS | Chr3 | 24099059 | G-A | HET | STOP_GAINED | LOC_Os03g43220 |
| SBS | Chr3 | 30072508 | C-A | Homo | ||
| SBS | Chr3 | 30072509 | G-A | Homo | ||
| SBS | Chr4 | 11791771 | A-C | Homo | ||
| SBS | Chr4 | 12848890 | C-T | Homo | ||
| SBS | Chr4 | 2373369 | C-T | Homo | ||
| SBS | Chr4 | 5809703 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g10680 |
| SBS | Chr5 | 18828813 | G-A | HET | ||
| SBS | Chr5 | 2929756 | G-A | Homo | ||
| SBS | Chr5 | 4908772 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g08880 |
| SBS | Chr6 | 15045627 | G-A | HET | ||
| SBS | Chr6 | 16783965 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g29350 |
| SBS | Chr7 | 13693304 | C-A | HET | ||
| SBS | Chr7 | 14097131 | C-A | HET |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1330268 | 1330277 | 9 | |
| Deletion | Chr3 | 3921814 | 3921833 | 19 | |
| Deletion | Chr10 | 6093921 | 6093932 | 11 | |
| Deletion | Chr5 | 6213447 | 6213449 | 2 | |
| Deletion | Chr9 | 7373829 | 7373831 | 2 | |
| Deletion | Chr11 | 8318355 | 8318356 | 1 | |
| Deletion | Chr10 | 8903766 | 8903768 | 2 | |
| Deletion | Chr2 | 10067871 | 10067874 | 3 | |
| Deletion | Chr4 | 13992617 | 13992639 | 22 | |
| Deletion | Chr7 | 14428494 | 14428496 | 2 | |
| Deletion | Chr6 | 15628162 | 15628163 | 1 | |
| Deletion | Chr6 | 19443471 | 19443472 | 1 | LOC_Os06g33380 |
| Deletion | Chr2 | 19833716 | 19833717 | 1 | |
| Deletion | Chr12 | 21801794 | 21801803 | 9 | |
| Deletion | Chr5 | 24960879 | 24960880 | 1 | |
| Deletion | Chr2 | 26544697 | 26544701 | 4 | |
| Deletion | Chr6 | 26922396 | 26922397 | 1 | LOC_Os06g44590 |
| Deletion | Chr3 | 28671902 | 28671911 | 9 | |
| Deletion | Chr1 | 29055109 | 29055110 | 1 | |
| Deletion | Chr2 | 29227280 | 29227283 | 3 | LOC_Os02g47790 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr9 | 17838997 | 17838997 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 4348532 | 4562263 | 2 |
| Inversion | Chr5 | 4348538 | 4562302 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 13911798 | Chr1 | 18784309 | |
| Translocation | Chr8 | 16637912 | Chr6 | 1224652 | |
| Translocation | Chr12 | 18707812 | Chr5 | 12102759 | LOC_Os05g20630 |
| Translocation | Chr9 | 18837867 | Chr1 | 39381254 | LOC_Os09g31330 |
| Translocation | Chr2 | 20267765 | Chr1 | 24514252 |