Search Results
Mutant Information |
---|
Mutant Name | FN4153-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4153-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10110747 | A-G | HET | ||
SBS | Chr1 | 21589402 | C-T | HET | ||
SBS | Chr3 | 18733557 | G-T | Homo | ||
SBS | Chr3 | 20977391 | A-G | Homo | ||
SBS | Chr5 | 3768674 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g07130 |
SBS | Chr5 | 16554827 | G-T | HET | ||
SBS | Chr5 | 21813334 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g37280 |
SBS | Chr6 | 11585359 | G-A | HET | ||
SBS | Chr6 | 19855806 | T-C | HET | ||
SBS | Chr6 | 19945342 | G-T | HET | ||
SBS | Chr6 | 28099901 | A-G | HET | ||
SBS | Chr6 | 29616735 | T-A | HET | ||
SBS | Chr6 | 29616736 | G-C | HET | ||
SBS | Chr7 | 14168948 | C-T | HET | ||
SBS | Chr8 | 17242088 | C-T | HET | ||
SBS | Chr8 | 22279129 | C-A | HET | ||
SBS | Chr8 | 25815553 | G-A | HET | ||
SBS | Chr8 | 25815556 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g40810 |
SBS | Chr9 | 5425721 | G-A | Homo | ||
SBS | Chr9 | 7847293 | C-T | HET | ||
SBS | Chr9 | 10833030 | C-T | HET | ||
SBS | Chr9 | 18234238 | T-G | Homo | ||
SBS | Chr10 | 18748500 | A-G | HET | ||
SBS | Chr11 | 16817630 | C-T | Homo | ||
SBS | Chr11 | 25511288 | C-T | HET | ||
SBS | Chr12 | 2009985 | G-A | HET | ||
SBS | Chr12 | 8215557 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14410 |
Deletions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 10627602 | 10627607 | 5 | |
Deletion | Chr10 | 13256774 | 13256789 | 15 | |
Deletion | Chr2 | 13636210 | 13636252 | 42 | |
Deletion | Chr11 | 15729062 | 15729066 | 4 | |
Deletion | Chr5 | 18004661 | 18004662 | 1 | LOC_Os05g30990 |
Deletion | Chr3 | 18325941 | 18325944 | 3 | |
Deletion | Chr7 | 26371886 | 26371890 | 4 | |
Deletion | Chr6 | 30053906 | 30053908 | 2 | |
Deletion | Chr2 | 32546922 | 32546928 | 6 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 14444198 | 14444198 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 151554 | 511447 | |
Inversion | Chr10 | 151586 | 511479 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 15238097 | Chr2 | 3401780 | |
Translocation | Chr9 | 18095053 | Chr4 | 34904195 | LOC_Os04g58700 |
Translocation | Chr8 | 19480857 | Chr4 | 14568595 | |
Translocation | Chr11 | 27843957 | Chr6 | 22526007 | 2 |