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| Mutant Information |
|---|
| Mutant Name | FN4154-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4154-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1183482 | T-C | Homo | ||
| SBS | Chr1 | 6213914 | C-G | HET | ||
| SBS | Chr10 | 18155258 | T-A | HET | ||
| SBS | Chr10 | 4488631 | T-C | HET | ||
| SBS | Chr10 | 6822213 | C-T | HET | ||
| SBS | Chr11 | 11641416 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g20150 |
| SBS | Chr11 | 25569446 | G-T | HET | ||
| SBS | Chr12 | 23018948 | G-A | HET | ||
| SBS | Chr2 | 20717782 | T-G | HET | ||
| SBS | Chr2 | 26587540 | G-A | HET | ||
| SBS | Chr2 | 26801259 | C-T | HET | ||
| SBS | Chr3 | 33686502 | G-A | Homo | ||
| SBS | Chr4 | 11156076 | C-T | HET | ||
| SBS | Chr4 | 14153297 | G-A | HET | ||
| SBS | Chr6 | 17062370 | C-T | HET | ||
| SBS | Chr6 | 17364850 | G-A | HET | ||
| SBS | Chr6 | 24377401 | G-A | Homo | ||
| SBS | Chr7 | 27735523 | G-T | HET | ||
| SBS | Chr8 | 16674091 | C-T | HET | ||
| SBS | Chr9 | 14734271 | C-A | Homo | ||
| SBS | Chr9 | 19304530 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g32330 |
| SBS | Chr9 | 2323845 | C-T | HET | ||
| SBS | Chr9 | 9753363 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g15960 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3989568 | 3989571 | 3 | |
| Deletion | Chr12 | 7641183 | 7641192 | 9 | |
| Deletion | Chr9 | 10423574 | 10423584 | 10 | |
| Deletion | Chr8 | 11174884 | 11174885 | 1 | LOC_Os08g18730 |
| Deletion | Chr9 | 11916478 | 11916486 | 8 | |
| Deletion | Chr6 | 13739001 | 13982000 | 242999 | 38 |
| Deletion | Chr6 | 14070001 | 14183000 | 112999 | 16 |
| Deletion | Chr6 | 14190001 | 14292000 | 101999 | 15 |
| Deletion | Chr6 | 14301001 | 14386000 | 84999 | 12 |
| Deletion | Chr12 | 17626695 | 17626704 | 9 | |
| Deletion | Chr1 | 23401330 | 23401346 | 16 | |
| Deletion | Chr1 | 24130873 | 24130882 | 9 | |
| Deletion | Chr11 | 25425764 | 25425774 | 10 | LOC_Os11g42200 |
| Deletion | Chr5 | 28885305 | 28885307 | 2 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 4466083 | 4466084 | 2 | |
| Insertion | Chr12 | 8690373 | 8690373 | 1 | |
| Insertion | Chr3 | 26761919 | 26761980 | 62 | |
| Insertion | Chr6 | 14244748 | 14244757 | 10 | |
| Insertion | Chr6 | 29086294 | 29086294 | 1 | LOC_Os06g48070 |
| Insertion | Chr7 | 12164891 | 12164896 | 6 | |
| Insertion | Chr8 | 11819534 | 11819534 | 1 |
No Inversion
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4574079 | Chr2 | 33280308 | 2 |
| Translocation | Chr12 | 5179131 | Chr8 | 15024737 | |
| Translocation | Chr12 | 9879072 | Chr10 | 327509 | |
| Translocation | Chr7 | 13236653 | Chr5 | 9247535 | LOC_Os07g23440 |
| Translocation | Chr10 | 13367285 | Chr1 | 25286977 | |
| Translocation | Chr12 | 18667591 | Chr7 | 10080107 | |
| Translocation | Chr11 | 18670212 | Chr7 | 11854530 | LOC_Os11g31810 |
| Translocation | Chr6 | 21361859 | Chr1 | 18784278 | |
| Translocation | Chr4 | 27248167 | Chr2 | 24373918 | LOC_Os02g40260 |