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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30512613	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53090
SBS	Chr1	30512614	G-A	HET
SBS	Chr1	39552567	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68040
SBS	Chr10	11992876	G-C	HET
SBS	Chr10	12575579	C-T	HET
SBS	Chr10	3002301	T-C	HET
SBS	Chr10	3334160	T-C	HET
SBS	Chr11	16162617	G-A	HET
SBS	Chr12	16295200	T-C	HET
SBS	Chr12	27446979	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g44280
SBS	Chr12	4987171	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g09500
SBS	Chr2	2596440	G-A	HET
SBS	Chr2	2596441	G-A	HET
SBS	Chr2	2596442	C-A	HET
SBS	Chr2	9429113	T-A	HET
SBS	Chr3	20135887	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g36300
SBS	Chr3	29422245	A-G	HET
SBS	Chr5	12169536	G-A	Homo
SBS	Chr5	2680466	C-G	Homo
SBS	Chr6	17573669	A-G	HET
SBS	Chr7	16325920	C-A	HET
SBS	Chr7	27771779	G-A	Homo
SBS	Chr8	18727352	C-G	Homo
SBS	Chr8	6464061	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g10960
SBS	Chr8	6726167	G-A	HET
SBS	Chr9	15091709	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25190
SBS	Chr9	18337754	C-T	HET
SBS	Chr9	3685898	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07410

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	274241	274252	11	LOC_Os08g01420
Deletion	Chr9	1228010	1228012	2
Deletion	Chr5	5187204	5187205	1
Deletion	Chr5	5385758	5385764	6
Deletion	Chr4	7349253	7349260	7
Deletion	Chr2	10074660	10074661	1
Deletion	Chr5	10291420	10291421	1
Deletion	Chr1	10934472	10934497	25
Deletion	Chr12	11262094	11262116	22
Deletion	Chr9	13614457	13614458	1
Deletion	Chr9	14679562	14679569	7
Deletion	Chr11	16136307	16136312	5
Deletion	Chr7	17111742	17111743	1
Deletion	Chr10	20593573	20593574	1
Deletion	Chr1	23040405	23040407	2
Deletion	Chr3	29355001	29407000	51999	8
Deletion	Chr4	30550037	30550043	6
Deletion	Chr2	30706712	30706713	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	28613305	28613306	2
Insertion	Chr11	26959030	26959030	1
Insertion	Chr8	8949570	8949571	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	20591526	20635241	LOC_Os04g34000
Inversion	Chr3	28157798	29123856	LOC_Os03g49464
Inversion	Chr3	28157815	29123865	LOC_Os03g49464
Inversion	Chr1	30607851	30678737	LOC_Os01g53260
Inversion	Chr1	30607855	30678741	LOC_Os01g53260

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9435838	Chr4	29789906
Translocation	Chr8	9723054	Chr2	9418844
Translocation	Chr12	9951551	Chr6	20870998
Translocation	Chr11	11831971	Chr7	14037580	LOC_Os07g24670
Translocation	Chr4	20591414	Chr2	9439661	LOC_Os04g34000
Translocation	Chr12	27187222	Chr11	14890282	LOC_Os11g26030

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