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Mutant Information |
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Mutant Name | FN4156-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4156-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21607449 | T-C | Homo | ||
SBS | Chr10 | 18718505 | G-C | Homo | ||
SBS | Chr10 | 21103305 | G-A | Homo | ||
SBS | Chr11 | 11652950 | G-T | Homo | ||
SBS | Chr11 | 8278655 | G-A | Homo | ||
SBS | Chr12 | 15671082 | A-G | HET | ||
SBS | Chr2 | 20155701 | C-A | HET | ||
SBS | Chr2 | 27517627 | G-C | HET | ||
SBS | Chr2 | 29098060 | G-A | HET | ||
SBS | Chr3 | 16236892 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g28204 |
SBS | Chr3 | 31870444 | T-C | HET | ||
SBS | Chr3 | 6065025 | A-G | HET | ||
SBS | Chr4 | 13295575 | C-T | HET | ||
SBS | Chr4 | 21699147 | G-A | HET | ||
SBS | Chr4 | 29542403 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g49540 |
SBS | Chr5 | 20860796 | C-T | HET | ||
SBS | Chr7 | 2655005 | A-G | HET | ||
SBS | Chr7 | 298641 | A-G | HET | ||
SBS | Chr8 | 23767899 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g37530 |
SBS | Chr8 | 8123708 | T-C | HET | ||
SBS | Chr9 | 21972228 | T-C | Homo | ||
SBS | Chr9 | 8205068 | C-T | HET |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 3964430 | 3964751 | 321 | |
Deletion | Chr3 | 4945776 | 4946027 | 251 | |
Deletion | Chr2 | 6821699 | 6821700 | 1 | |
Deletion | Chr2 | 10906931 | 10906934 | 3 | |
Deletion | Chr10 | 10975069 | 10975070 | 1 | |
Deletion | Chr11 | 11282278 | 11282281 | 3 | |
Deletion | Chr7 | 12229807 | 12229808 | 1 | |
Deletion | Chr2 | 12910790 | 12910793 | 3 | LOC_Os02g21720 |
Deletion | Chr2 | 17969098 | 17969099 | 1 | |
Deletion | Chr11 | 27372915 | 27372916 | 1 | LOC_Os11g45230 |
Insertions: 7
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 30675345 | 30675346 | 2 | |
Insertion | Chr3 | 22099600 | 22099601 | 2 | |
Insertion | Chr4 | 7947891 | 7947891 | 1 | |
Insertion | Chr6 | 14147695 | 14147695 | 1 | LOC_Os06g24170![]() |
Insertion | Chr6 | 7629182 | 7629183 | 2 | |
Insertion | Chr7 | 16594091 | 16594095 | 5 | |
Insertion | Chr8 | 18774376 | 18774379 | 4 |
Inversions: 6
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 741274 | 741629 | |
Inversion | Chr5 | 3987088 | 3987337 | |
Inversion | Chr5 | 16022624 | 16297423 | 2 |
Inversion | Chr5 | 16024179 | 16297435 | LOC_Os05g27930 |
Inversion | Chr6 | 20094191 | 20104826 | |
Inversion | Chr6 | 20094192 | 20104825 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr4 | 481613 | Chr2 | 11548165 | LOC_Os02g19730 |
Translocation | Chr9 | 2171228 | Chr2 | 10775862 | |
Translocation | Chr9 | 7919069 | Chr5 | 16024179 | LOC_Os09g13610 |
Translocation | Chr7 | 8623554 | Chr2 | 28383049 | |
Translocation | Chr11 | 19852836 | Chr1 | 39522046 | |
Translocation | Chr6 | 27543248 | Chr4 | 13298773 | 2 |