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Mutant Information

Mutant NameFN4156-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN4156-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 22
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121607449T-CHomo
SBSChr1018718505G-CHomo
SBSChr1021103305G-AHomo
SBSChr1111652950G-THomo
SBSChr118278655G-AHomo
SBSChr1215671082A-GHET
SBSChr220155701C-AHET
SBSChr227517627G-CHET
SBSChr229098060G-AHET
SBSChr316236892A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g28204
SBSChr331870444T-CHET
SBSChr36065025A-GHET
SBSChr413295575C-THET
SBSChr421699147G-AHET
SBSChr429542403G-THETNON_SYNONYMOUS_CODINGLOC_Os04g49540
SBSChr520860796C-THET
SBSChr72655005A-GHET
SBSChr7298641A-GHET
SBSChr823767899G-AHETNON_SYNONYMOUS_CODINGLOC_Os08g37530
SBSChr88123708T-CHET
SBSChr921972228T-CHomo
SBSChr98205068C-THET

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr139644303964751321
DeletionChr349457764946027251
DeletionChr2682169968217001
DeletionChr210906931109069343
DeletionChr1010975069109750701
DeletionChr1111282278112822813
DeletionChr712229807122298081
DeletionChr212910790129107933LOC_Os02g21720
DeletionChr217969098179690991
DeletionChr1127372915273729161LOC_Os11g45230

Insertions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr130675345306753462
InsertionChr322099600220996012
InsertionChr4794789179478911
InsertionChr614147695141476951LOC_Os06g24170image
InsertionChr6762918276291832
InsertionChr716594091165940955
InsertionChr818774376187743794

Inversions: 6
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr4741274741629
InversionChr539870883987337
InversionChr516022624162974232
InversionChr51602417916297435LOC_Os05g27930
InversionChr62009419120104826
InversionChr62009419220104825

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr4481613Chr211548165LOC_Os02g19730
TranslocationChr92171228Chr210775862
TranslocationChr97919069Chr516024179LOC_Os09g13610
TranslocationChr78623554Chr228383049
TranslocationChr1119852836Chr139522046
TranslocationChr627543248Chr4132987732