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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9150620	T-C	HET
SBS	Chr1	14495632	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25580
SBS	Chr1	23216030	G-A	HET
SBS	Chr2	15277246	C-T	Homo
SBS	Chr2	19041621	A-G	HET
SBS	Chr3	13176432	A-T	HET
SBS	Chr3	14621758	G-A	Homo
SBS	Chr3	22228125	G-A	HET
SBS	Chr3	29618849	T-C	Homo
SBS	Chr4	904112	A-T	HET
SBS	Chr4	1631379	C-T	HET
SBS	Chr5	9148067	T-A	HET
SBS	Chr5	13619248	A-T	HET
SBS	Chr5	16057517	G-A	HET
SBS	Chr6	8128123	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g14460
SBS	Chr6	22681695	G-A	Homo
SBS	Chr7	9239315	G-A	HET
SBS	Chr7	12282490	T-C	HET
SBS	Chr8	7381911	G-A	Homo
SBS	Chr8	13820278	T-C	HET
SBS	Chr8	16743012	T-A	Homo
SBS	Chr8	19854187	G-A	Homo
SBS	Chr9	21937466	G-A	HET
SBS	Chr10	7295626	G-T	Homo
SBS	Chr10	22838946	T-A	Homo
SBS	Chr11	20268085	C-T	HET
SBS	Chr11	24871543	G-A	HET
SBS	Chr12	9864108	C-A	Homo

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	188679	188682	3
Deletion	Chr5	8481001	8546000	64999	10
Deletion	Chr5	8549001	8791000	241999	46
Deletion	Chr5	8803001	9012000	208999	40
Deletion	Chr3	8939001	8997000	57999	8
Deletion	Chr5	9014001	9115000	100999	16
Deletion	Chr7	11097826	11097827	1
Deletion	Chr3	11641388	11641390	2
Deletion	Chr7	11892387	11892389	2
Deletion	Chr2	12139673	12139675	2
Deletion	Chr12	13567271	13567274	3
Deletion	Chr7	15232001	15303000	70999	9
Deletion	Chr10	23176103	23176112	9
Deletion	Chr2	23462995	23462996	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	29939605	29939611	7
Insertion	Chr10	5097313	5097315	3
Insertion	Chr11	21228561	21228561	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15186475	15232220	2
Inversion	Chr7	15186495	15303848	LOC_Os07g26420
Inversion	Chr1	37870537	37888309	LOC_Os01g65310
Inversion	Chr1	37870548	37888343	LOC_Os01g65310

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7078606	Chr7	17406960	2
Translocation	Chr12	8566889	Chr10	2106336
Translocation	Chr8	9703302	Chr6	18191761
Translocation	Chr10	12429129	Chr4	4810191
Translocation	Chr8	14932717	Chr5	20403560	LOC_Os05g34440
Translocation	Chr7	16928313	Chr4	6466726
Translocation	Chr4	17832075	Chr2	12837072
Translocation	Chr6	23266060	Chr2	11457996	2
Translocation	Chr11	23445332	Chr3	14593068
Translocation	Chr5	25539246	Chr1	40624417
Translocation	Chr11	27700772	Chr3	36199797

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