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| Mutant Information |
|---|
| Mutant Name | FN4164-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4164-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr11 | 14446968 | C-A | Homo | ||
| SBS | Chr11 | 1492730 | C-T | HET | ||
| SBS | Chr11 | 1680915 | G-A | HET | ||
| SBS | Chr11 | 25066761 | T-C | HET | ||
| SBS | Chr12 | 3478755 | G-T | HET | ||
| SBS | Chr2 | 2177138 | T-A | HET | ||
| SBS | Chr2 | 34510835 | T-A | HET | STOP_GAINED | LOC_Os02g56370 |
| SBS | Chr2 | 34510836 | G-T | HET | ||
| SBS | Chr2 | 6445213 | A-G | HET | ||
| SBS | Chr2 | 7837551 | G-A | Homo | ||
| SBS | Chr2 | 7921812 | G-A | Homo | ||
| SBS | Chr2 | 7945198 | A-T | Homo | ||
| SBS | Chr2 | 893426 | A-G | HET | ||
| SBS | Chr3 | 1729168 | C-G | Homo | ||
| SBS | Chr3 | 35443399 | G-A | HET | ||
| SBS | Chr4 | 427891 | C-T | HET | ||
| SBS | Chr4 | 8648386 | G-C | Homo | ||
| SBS | Chr6 | 27535646 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g45520 |
| SBS | Chr6 | 29862591 | C-T | Homo | ||
| SBS | Chr7 | 15312998 | A-T | HET | ||
| SBS | Chr7 | 2206362 | C-T | HET | ||
| SBS | Chr7 | 2206363 | C-T | HET | ||
| SBS | Chr7 | 24339059 | C-A | Homo | ||
| SBS | Chr8 | 10224011 | C-A | HET | ||
| SBS | Chr8 | 19068303 | C-A | HET | ||
| SBS | Chr8 | 5008697 | T-C | Homo | ||
| SBS | Chr9 | 13681634 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g23130 |
| SBS | Chr9 | 21083209 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g36550 |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 996015 | 996022 | 7 | LOC_Os08g02470 |
| Deletion | Chr3 | 2355099 | 2355100 | 1 | |
| Deletion | Chr6 | 5227624 | 5227641 | 17 | |
| Deletion | Chr6 | 7274001 | 7293000 | 18999 | LOC_Os06g13240 |
| Deletion | Chr9 | 12734373 | 12734375 | 2 | LOC_Os09g21110 |
| Deletion | Chr1 | 15472271 | 15472275 | 4 | |
| Deletion | Chr7 | 19757380 | 19757387 | 7 | |
| Deletion | Chr10 | 21599590 | 21599592 | 2 | |
| Deletion | Chr1 | 27313941 | 27313942 | 1 | |
| Deletion | Chr4 | 35125001 | 35157000 | 31999 | 5 |
| Deletion | Chr1 | 41973027 | 41973032 | 5 |
Insertions: 5
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 36261630 | 36310730 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 10779849 | Chr2 | 19373249 | |
| Translocation | Chr8 | 20167449 | Chr7 | 1780280 | LOC_Os07g04160 |
| Translocation | Chr9 | 20546969 | Chr6 | 23626448 | LOC_Os09g35720 |
| Translocation | Chr8 | 22651595 | Chr7 | 3872019 | LOC_Os08g35910 |
| Translocation | Chr7 | 23610178 | Chr1 | 40306120 | |
| Translocation | Chr11 | 24451267 | Chr2 | 28052150 | LOC_Os11g40870 |
| Translocation | Chr12 | 27035520 | Chr8 | 25099581 |