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| Mutant Information |
|---|
| Mutant Name | FN4166-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4166-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22070551 | G-A | HET | ||
| SBS | Chr1 | 29758727 | T-C | Homo | ||
| SBS | Chr1 | 8094062 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14450 |
| SBS | Chr10 | 7812814 | G-A | HET | ||
| SBS | Chr11 | 1455711 | T-A | Homo | ||
| SBS | Chr11 | 16565960 | G-T | HET | ||
| SBS | Chr11 | 27825376 | G-T | Homo | ||
| SBS | Chr2 | 17049346 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g28830 |
| SBS | Chr2 | 23729620 | G-A | HET | ||
| SBS | Chr2 | 23729621 | C-A | HET | ||
| SBS | Chr2 | 34176192 | G-C | Homo | ||
| SBS | Chr2 | 7254068 | G-T | Homo | ||
| SBS | Chr3 | 15668474 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g27360 |
| SBS | Chr3 | 27116745 | G-A | Homo | ||
| SBS | Chr3 | 8615821 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g15620 |
| SBS | Chr3 | 9863238 | T-C | Homo | ||
| SBS | Chr4 | 19379131 | T-A | HET | ||
| SBS | Chr4 | 26503630 | A-G | HET | ||
| SBS | Chr4 | 31026022 | G-A | HET | ||
| SBS | Chr4 | 6929709 | C-G | HET | ||
| SBS | Chr4 | 8536841 | T-C | HET | ||
| SBS | Chr5 | 5936105 | T-C | Homo | ||
| SBS | Chr6 | 28442271 | C-T | HET | ||
| SBS | Chr6 | 5952027 | C-T | HET | ||
| SBS | Chr7 | 16272047 | T-G | HET | ||
| SBS | Chr7 | 28880849 | T-G | Homo | ||
| SBS | Chr9 | 11997062 | A-G | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1489766 | 1489768 | 2 | |
| Deletion | Chr12 | 4944801 | 4944804 | 3 | |
| Deletion | Chr5 | 10881649 | 10881650 | 1 | |
| Deletion | Chr3 | 11894207 | 11894209 | 2 | |
| Deletion | Chr2 | 12855885 | 12855891 | 6 | |
| Deletion | Chr5 | 13825686 | 13825697 | 11 | LOC_Os05g24000 |
| Deletion | Chr11 | 15324520 | 15324521 | 1 | |
| Deletion | Chr8 | 16470222 | 16470223 | 1 | |
| Deletion | Chr7 | 19358072 | 19358074 | 2 | |
| Deletion | Chr12 | 23534944 | 23534945 | 1 | |
| Deletion | Chr2 | 29575618 | 29575627 | 9 | |
| Deletion | Chr1 | 30247506 | 30247510 | 4 | |
| Deletion | Chr3 | 36253536 | 36253543 | 7 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 865628 | 1817398 | |
| Inversion | Chr3 | 1817407 | 2145285 | LOC_Os03g04590 |
Translocations: 20
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3666301 | Chr4 | 5585923 | |
| Translocation | Chr10 | 5651963 | Chr8 | 3463752 | LOC_Os08g06280 |
| Translocation | Chr8 | 6733738 | Chr2 | 2417820 | |
| Translocation | Chr11 | 7073666 | Chr7 | 17406846 | 2 |
| Translocation | Chr12 | 7150141 | Chr6 | 6856994 | |
| Translocation | Chr9 | 8186177 | Chr1 | 40519400 | |
| Translocation | Chr3 | 12146453 | Chr1 | 1044051 | LOC_Os03g21260 |
| Translocation | Chr10 | 14333309 | Chr9 | 10527948 | LOC_Os10g27200 |
| Translocation | Chr12 | 16084927 | Chr9 | 11363237 | |
| Translocation | Chr12 | 17991594 | Chr3 | 865898 | |
| Translocation | Chr12 | 17991597 | Chr3 | 865635 | |
| Translocation | Chr11 | 19817768 | Chr8 | 19393150 | |
| Translocation | Chr12 | 20543276 | Chr2 | 10451969 | LOC_Os02g18010 |
| Translocation | Chr12 | 20544179 | Chr2 | 10451954 | LOC_Os02g18010 |
| Translocation | Chr6 | 20945316 | Chr1 | 4868813 | |
| Translocation | Chr3 | 24883124 | Chr2 | 8852487 | |
| Translocation | Chr11 | 26038030 | Chr9 | 16893896 | |
| Translocation | Chr11 | 26952279 | Chr3 | 34241379 | LOC_Os03g60200 |
| Translocation | Chr11 | 26972550 | Chr1 | 35452941 | 2 |
| Translocation | Chr7 | 27265712 | Chr6 | 23376148 |