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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16422117	A-C	Homo
SBS	Chr1	31027782	C-A	HET
SBS	Chr1	40657776	G-A	HET
SBS	Chr1	9655115	T-A	HET
SBS	Chr11	10889720	C-T	HET	STOP_GAINED	LOC_Os11g19100
SBS	Chr11	28525144	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g47420
SBS	Chr11	9755086	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17504
SBS	Chr12	8483052	T-C	Homo
SBS	Chr12	9103166	G-A	HET
SBS	Chr2	23957092	C-T	Homo
SBS	Chr3	14013472	T-C	Homo
SBS	Chr3	19309308	G-C	HET
SBS	Chr4	11417209	C-T	Homo
SBS	Chr4	1660776	C-G	Homo
SBS	Chr4	8968412	C-T	Homo
SBS	Chr5	20579922	A-G	HET
SBS	Chr6	1204902	G-A	HET
SBS	Chr6	14068785	T-C	Homo
SBS	Chr7	12684932	C-T	Homo
SBS	Chr7	21093848	G-A	HET
SBS	Chr7	22958580	C-T	HET
SBS	Chr7	22958581	C-T	HET
SBS	Chr7	26466454	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44290
SBS	Chr7	26833401	T-A	HET
SBS	Chr8	18349705	C-A	Homo
SBS	Chr8	7687543	A-T	HET
SBS	Chr8	9541496	G-A	Homo
SBS	Chr9	10310407	G-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	720116	720118	2
Deletion	Chr7	4780640	4780641	1
Deletion	Chr5	5841790	5841791	1
Deletion	Chr12	7134906	7134907	1
Deletion	Chr12	8476236	8476237	1
Deletion	Chr10	8792249	8792252	3
Deletion	Chr3	9931001	9991000	59999	11
Deletion	Chr5	10622104	10622105	1
Deletion	Chr8	14225444	14225446	2
Deletion	Chr4	14382011	14382018	7	LOC_Os04g24960
Deletion	Chr7	18184281	18184282	1
Deletion	Chr1	20001148	20001149	1
Deletion	Chr1	21690561	21690584	23
Deletion	Chr2	27396283	27396288	5
Deletion	Chr5	28754077	28754078	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	26562552	26562553	2
Insertion	Chr4	29377951	29377952	2
Insertion	Chr6	29254786	29254787	2
Insertion	Chr7	11309599	11309599	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14812301	15065333
Inversion	Chr7	14812313	15065338
Inversion	Chr7	18181446	18281073	LOC_Os07g30880

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5106450	Chr7	4148426	LOC_Os09g09480
Translocation	Chr8	8335540	Chr7	3171880	LOC_Os07g06530
Translocation	Chr8	9908792	Chr4	14225124
Translocation	Chr12	13547459	Chr11	22973797	LOC_Os11g38710
Translocation	Chr4	14116236	Chr2	19325009	LOC_Os02g32610
Translocation	Chr11	17001353	Chr5	7580589	LOC_Os05g13680
Translocation	Chr11	17007609	Chr5	7580586	LOC_Os05g13680
Translocation	Chr10	17323126	Chr1	23664817
Translocation	Chr12	20909709	Chr6	8521025
Translocation	Chr7	22918112	Chr3	17572593	LOC_Os07g38210
Translocation	Chr8	27804406	Chr2	15723671	2
Translocation	Chr11	28650696	Chr7	17052118	LOC_Os11g47446

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