Search Results
| Mutant Information |
|---|
| Mutant Name | FN4167-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4167-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9655115 | T-A | HET | ||
| SBS | Chr1 | 16422117 | A-C | Homo | ||
| SBS | Chr1 | 31027782 | C-A | HET | ||
| SBS | Chr1 | 40657776 | G-A | HET | ||
| SBS | Chr2 | 23957092 | C-T | Homo | ||
| SBS | Chr3 | 14013472 | T-C | Homo | ||
| SBS | Chr3 | 19309308 | G-C | HET | ||
| SBS | Chr4 | 1660776 | C-G | Homo | ||
| SBS | Chr4 | 8968412 | C-T | Homo | ||
| SBS | Chr4 | 11417209 | C-T | Homo | ||
| SBS | Chr5 | 20579922 | A-G | HET | ||
| SBS | Chr6 | 1204902 | G-A | HET | ||
| SBS | Chr6 | 14068785 | T-C | Homo | ||
| SBS | Chr7 | 12684932 | C-T | Homo | ||
| SBS | Chr7 | 21093848 | G-A | HET | ||
| SBS | Chr7 | 22958580 | C-T | HET | ||
| SBS | Chr7 | 22958581 | C-T | HET | ||
| SBS | Chr7 | 26466454 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g44290 |
| SBS | Chr7 | 26833401 | T-A | HET | ||
| SBS | Chr8 | 7687543 | A-T | HET | ||
| SBS | Chr8 | 9541496 | G-A | Homo | ||
| SBS | Chr8 | 18349705 | C-A | Homo | ||
| SBS | Chr9 | 10310407 | G-A | HET | ||
| SBS | Chr11 | 9755086 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g17504 |
| SBS | Chr11 | 10889720 | C-T | HET | STOP_GAINED | LOC_Os11g19100 |
| SBS | Chr11 | 28525144 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g47420 |
| SBS | Chr12 | 8483052 | T-C | Homo | ||
| SBS | Chr12 | 9103166 | G-A | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 720116 | 720118 | 2 | |
| Deletion | Chr7 | 4780640 | 4780641 | 1 | |
| Deletion | Chr5 | 5841790 | 5841791 | 1 | |
| Deletion | Chr12 | 7134906 | 7134907 | 1 | |
| Deletion | Chr12 | 8476236 | 8476237 | 1 | |
| Deletion | Chr10 | 8792249 | 8792252 | 3 | |
| Deletion | Chr3 | 9931001 | 9991000 | 59999 | 11 |
| Deletion | Chr5 | 10622104 | 10622105 | 1 | |
| Deletion | Chr8 | 14225444 | 14225446 | 2 | |
| Deletion | Chr4 | 14382011 | 14382018 | 7 | LOC_Os04g24960 |
| Deletion | Chr7 | 18184281 | 18184282 | 1 | |
| Deletion | Chr1 | 20001148 | 20001149 | 1 | |
| Deletion | Chr1 | 21690561 | 21690584 | 23 | |
| Deletion | Chr2 | 27396283 | 27396288 | 5 | |
| Deletion | Chr5 | 28754077 | 28754078 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 29377951 | 29377952 | 2 | |
| Insertion | Chr6 | 29254786 | 29254787 | 2 | |
| Insertion | Chr7 | 11309599 | 11309599 | 1 | |
| Insertion | Chr12 | 26562552 | 26562553 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 14812301 | 15065333 | |
| Inversion | Chr7 | 14812313 | 15065338 | |
| Inversion | Chr7 | 18181446 | 18281073 | LOC_Os07g30880 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 5106450 | Chr7 | 4148426 | LOC_Os09g09480 |
| Translocation | Chr8 | 8335540 | Chr7 | 3171880 | LOC_Os07g06530 |
| Translocation | Chr8 | 9908792 | Chr4 | 14225124 | |
| Translocation | Chr12 | 13547459 | Chr11 | 22973797 | LOC_Os11g38710 |
| Translocation | Chr4 | 14116236 | Chr2 | 19325009 | LOC_Os02g32610 |
| Translocation | Chr11 | 17001353 | Chr5 | 7580589 | LOC_Os05g13680 |
| Translocation | Chr11 | 17007609 | Chr5 | 7580586 | LOC_Os05g13680 |
| Translocation | Chr10 | 17323126 | Chr1 | 23664817 | |
| Translocation | Chr12 | 20909709 | Chr6 | 8521025 | |
| Translocation | Chr7 | 22918112 | Chr3 | 17572593 | LOC_Os07g38210 |
| Translocation | Chr8 | 27804406 | Chr2 | 15723671 | 2 |
| Translocation | Chr11 | 28650696 | Chr7 | 17052118 | LOC_Os11g47446 |