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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13951429	C-T	HET	INTERGENIC
SBS	Chr1	16459240	A-G	HET	INTERGENIC
SBS	Chr1	18099488	G-C	HET	INTERGENIC
SBS	Chr1	18905914	T-G	HET	SYNONYMOUS_CODING
SBS	Chr1	41220335	A-G	HET	UTR_5_PRIME
SBS	Chr1	4222029	C-A	HET	INTERGENIC
SBS	Chr10	11857914	C-T	HOMO	INTERGENIC
SBS	Chr10	12206886	T-C	HOMO	INTERGENIC
SBS	Chr10	12711570	C-A	HOMO	INTERGENIC
SBS	Chr11	15247248	G-T	HOMO	INTERGENIC
SBS	Chr11	1673112	C-T	HET	INTERGENIC
SBS	Chr11	9179579	C-T	HET	INTRON
SBS	Chr12	17094776	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28920
SBS	Chr12	25005644	G-T	HET	INTRON
SBS	Chr12	8233157	C-A	HOMO	INTERGENIC
SBS	Chr12	9518143	G-A	HET	INTERGENIC
SBS	Chr2	20875557	A-C	HET	INTERGENIC
SBS	Chr3	10412903	T-A	HET	INTERGENIC
SBS	Chr3	11996597	T-A	HET	INTERGENIC
SBS	Chr4	19950274	G-T	HOMO	INTERGENIC
SBS	Chr4	23203985	A-G	HOMO	INTERGENIC
SBS	Chr4	26681011	A-G	HET	INTERGENIC
SBS	Chr4	3419820	C-G	HET	INTERGENIC
SBS	Chr5	2075555	G-A	HET	INTERGENIC
SBS	Chr5	28134174	G-A	HET	INTERGENIC
SBS	Chr5	8935485	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15820
SBS	Chr6	2265751	C-G	HET	INTERGENIC
SBS	Chr6	4420625	T-A	HET	INTERGENIC
SBS	Chr6	512605	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01920
SBS	Chr6	779293	T-C	HET	INTRON
SBS	Chr8	10306835	C-T	HET	INTERGENIC
SBS	Chr9	21060326	G-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	569513	569515	2
Deletion	Chr12	1174506	1174531	25
Deletion	Chr11	2787374	2787392	18
Deletion	Chr3	4104871	4104882	11
Deletion	Chr3	5972257	5972259	2	LOC_Os03g11520
Deletion	Chr6	6078571	6078582	11
Deletion	Chr7	9313001	9331000	18000	4
Deletion	Chr3	10067472	10067473	1	LOC_Os03g18060
Deletion	Chr2	16883812	16883816	4
Deletion	Chr12	17049047	17049048	1
Deletion	Chr12	17094780	17094785	5	LOC_Os12g28920
Deletion	Chr5	17939001	17977000	38000	6
Deletion	Chr10	19108245	19108254	9
Deletion	Chr11	21136422	21136423	1	LOC_Os11g35970
Deletion	Chr1	25826225	25826227	2	LOC_Os01g45510
Deletion	Chr6	27206123	27206159	36
Deletion	Chr1	31838535	31838545	10
Deletion	Chr1	33896334	34128021	231687	39

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	22762680	22762680	1
Insertion	Chr3	11318167	11318167	1
Insertion	Chr3	8054875	8054876	2
Insertion	Chr6	10369851	10369852	2
Insertion	Chr6	2795534	2795534	1
Insertion	Chr8	24124414	24124415	2

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12473933	Chr1	5690074	LOC_Os01g10650
Translocation	Chr9	15062119	Chr4	29266147
Translocation	Chr3	35579704	Chr1	23075271	LOC_Os01g40820

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