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| Mutant Information |
|---|
| Mutant Name | FN4172-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4172-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16834936 | C-T | Homo | ||
| SBS | Chr1 | 27823376 | C-T | HET | ||
| SBS | Chr1 | 40299830 | C-T | HET | ||
| SBS | Chr1 | 42180382 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g72690 |
| SBS | Chr10 | 16202739 | T-A | Homo | ||
| SBS | Chr10 | 16202740 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g31030 |
| SBS | Chr10 | 17169413 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g32790 |
| SBS | Chr10 | 3712306 | A-G | Homo | ||
| SBS | Chr11 | 18344298 | G-T | HET | ||
| SBS | Chr12 | 21911639 | C-A | HET | ||
| SBS | Chr12 | 26608146 | A-T | HET | ||
| SBS | Chr2 | 26285679 | C-A | HET | ||
| SBS | Chr2 | 28857792 | G-A | HET | ||
| SBS | Chr3 | 24292260 | G-A | HET | ||
| SBS | Chr3 | 36289856 | C-A | Homo | ||
| SBS | Chr4 | 27173822 | G-A | HET | ||
| SBS | Chr4 | 32485714 | G-T | Homo | ||
| SBS | Chr5 | 13661896 | A-G | HET | ||
| SBS | Chr5 | 13661898 | G-A | HET | ||
| SBS | Chr6 | 22170521 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37480 |
| SBS | Chr7 | 100564 | C-T | HET | ||
| SBS | Chr7 | 16119051 | A-T | HET | ||
| SBS | Chr7 | 23740121 | G-A | Homo | ||
| SBS | Chr8 | 17154372 | C-T | HET | ||
| SBS | Chr8 | 18437571 | G-A | HET | ||
| SBS | Chr9 | 16678677 | A-T | Homo | ||
| SBS | Chr9 | 6358397 | C-T | HET | ||
| SBS | Chr9 | 7437579 | T-A | Homo | ||
| SBS | Chr9 | 8374613 | C-T | Homo | ||
| SBS | Chr9 | 941497 | C-G | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1138567 | 1138577 | 10 | |
| Deletion | Chr11 | 1449302 | 1449310 | 8 | |
| Deletion | Chr10 | 1460500 | 1460517 | 17 | |
| Deletion | Chr5 | 2657887 | 2657890 | 3 | |
| Deletion | Chr8 | 6181001 | 6215000 | 33999 | 4 |
| Deletion | Chr7 | 7185438 | 7185450 | 12 | |
| Deletion | Chr10 | 12050110 | 12050114 | 4 | |
| Deletion | Chr6 | 12481282 | 12481297 | 15 | |
| Deletion | Chr2 | 14519494 | 14519495 | 1 | |
| Deletion | Chr6 | 15988354 | 15988356 | 2 | |
| Deletion | Chr12 | 18136776 | 18136777 | 1 | LOC_Os12g30214 |
| Deletion | Chr10 | 19425791 | 19425800 | 9 | LOC_Os10g36360 |
| Deletion | Chr10 | 19562892 | 19562897 | 5 | |
| Deletion | Chr7 | 20732079 | 20732088 | 9 | |
| Deletion | Chr6 | 20862302 | 20862308 | 6 | LOC_Os06g35750 |
| Deletion | Chr11 | 22931782 | 22931859 | 77 | |
| Deletion | Chr5 | 25899944 | 25899946 | 2 | |
| Deletion | Chr1 | 26835883 | 26835886 | 3 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 8095476 | 8095477 | 2 | |
| Insertion | Chr11 | 11461917 | 11461918 | 2 | |
| Insertion | Chr11 | 15082711 | 15082712 | 2 | |
| Insertion | Chr12 | 9213418 | 9213421 | 4 | |
| Insertion | Chr5 | 6362961 | 6362966 | 6 | |
| Insertion | Chr7 | 13815268 | 13815269 | 2 | |
| Insertion | Chr7 | 27604320 | 27604322 | 3 | LOC_Os07g46260 |
Inversions: 7
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1612426 | Chr5 | 15682841 | 2 |
| Translocation | Chr4 | 12889636 | Chr2 | 23217566 | LOC_Os02g38392 |
| Translocation | Chr8 | 16049363 | Chr4 | 13175658 | LOC_Os08g26310 |
| Translocation | Chr8 | 18648503 | Chr2 | 12700669 | |
| Translocation | Chr7 | 19555659 | Chr3 | 15104034 | |
| Translocation | Chr11 | 22572241 | Chr7 | 4765529 | LOC_Os11g38050 |
| Translocation | Chr11 | 27992038 | Chr10 | 12685623 | LOC_Os11g46230 |