Search Results
| Mutant Information |
|---|
| Mutant Name | FN4173-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4173-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 4681312 | A-G | HET | ||
| SBS | Chr2 | 8261090 | G-A | HET | ||
| SBS | Chr2 | 17905800 | A-T | HET | ||
| SBS | Chr4 | 9653600 | A-G | HET | ||
| SBS | Chr5 | 11301980 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g19450 |
| SBS | Chr5 | 11301981 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g19450 |
| SBS | Chr6 | 4174155 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g08480 |
| SBS | Chr6 | 25569069 | C-A | HET | ||
| SBS | Chr7 | 85577 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g01140 |
| SBS | Chr7 | 28418906 | G-A | Homo | ||
| SBS | Chr8 | 1190136 | G-A | HET | ||
| SBS | Chr9 | 8394016 | G-C | Homo | ||
| SBS | Chr9 | 12275003 | A-G | Homo | ||
| SBS | Chr10 | 733356 | C-T | HET | ||
| SBS | Chr10 | 1080963 | C-T | HET | ||
| SBS | Chr10 | 2683660 | T-C | Homo | ||
| SBS | Chr10 | 4689901 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g08650 |
| SBS | Chr11 | 17692493 | C-A | Homo | ||
| SBS | Chr11 | 18838613 | G-A | Homo | ||
| SBS | Chr11 | 22428570 | T-C | HET | ||
| SBS | Chr12 | 13020847 | G-A | Homo | STOP_GAINED | LOC_Os12g23030 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1340683 | 1340685 | 2 | |
| Deletion | Chr7 | 2345143 | 2345144 | 1 | |
| Deletion | Chr7 | 11986830 | 11986833 | 3 | LOC_Os07g20720 |
| Deletion | Chr3 | 13925658 | 13925668 | 10 | |
| Deletion | Chr3 | 13951120 | 13951123 | 3 | |
| Deletion | Chr9 | 15562202 | 15562212 | 10 | |
| Deletion | Chr8 | 17051091 | 17051092 | 1 | |
| Deletion | Chr1 | 17839806 | 17839814 | 8 | |
| Deletion | Chr8 | 22335961 | 22335964 | 3 | |
| Deletion | Chr3 | 22589763 | 22589765 | 2 | |
| Deletion | Chr8 | 25499864 | 25499866 | 2 | |
| Deletion | Chr4 | 28947442 | 28947443 | 1 |
Insertions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 6673571 | 6673574 | 4 | |
| Insertion | Chr6 | 5718480 | 5718481 | 2 | |
| Insertion | Chr12 | 20037069 | 20037070 | 2 | |
| Insertion | Chr3 | 17916094 | 17916187 | 94 | LOC_Os03g31440 |
| Insertion | Chr5 | 5661449 | 5661449 | 1 | |
| Insertion | Chr5 | 9941976 | 9941976 | 1 | |
| Insertion | Chr8 | 1158721 | 1158748 | 28 | |
| Insertion | Chr10 | 15095266 | 15095266 | 1 | |
| Insertion | Chr7 | 174804 | 174804 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 19996504 | 19996666 | |
| Inversion | Chr1 | 24022051 | 24491573 | |
| Inversion | Chr1 | 24498540 | 25067057 | LOC_Os01g43750 |
| Inversion | Chr3 | 32896243 | 32900965 | |
| Inversion | Chr3 | 32896246 | 32900967 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 2412255 | Chr3 | 20246555 | |
| Translocation | Chr7 | 2412267 | Chr3 | 20246046 | |
| Translocation | Chr5 | 18263264 | Chr2 | 7696022 | LOC_Os02g14100 |
| Translocation | Chr5 | 19190129 | Chr4 | 13832267 | |
| Translocation | Chr11 | 19695802 | Chr7 | 8780656 | LOC_Os11g33300 |
| Translocation | Chr11 | 22529213 | Chr6 | 13013197 | LOC_Os11g37990 |