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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	22163141	T-A	Homo
SBS	Chr2	28034651	G-A	Homo
SBS	Chr3	32131494	T-A	Homo
SBS	Chr4	1198147	C-T	HET
SBS	Chr4	11642761	G-A	HET
SBS	Chr5	444567	G-A	HET
SBS	Chr5	4138309	A-G	HET
SBS	Chr5	17467750	A-G	HET
SBS	Chr5	23440924	C-A	HET
SBS	Chr6	2768301	G-A	Homo
SBS	Chr6	16214887	C-T	HET
SBS	Chr6	28617790	C-T	HET
SBS	Chr8	22740732	T-A	Homo
SBS	Chr9	1862118	T-C	HET
SBS	Chr9	1862120	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03690
SBS	Chr9	5216036	A-G	HET
SBS	Chr10	16201001	T-C	HET
SBS	Chr11	2250610	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g05130
SBS	Chr12	13685176	G-A	Homo
SBS	Chr12	19716697	A-G	Homo

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1458102	1458104	2
Deletion	Chr9	3293034	3293035	1
Deletion	Chr9	5160896	5160901	5
Deletion	Chr4	6050922	6050939	17
Deletion	Chr4	7960864	7960865	1
Deletion	Chr7	8530761	8530767	6
Deletion	Chr4	8615036	8615037	1
Deletion	Chr2	8733766	8733774	8
Deletion	Chr7	9421001	9529000	107999	12
Deletion	Chr6	10213411	10213418	7
Deletion	Chr2	12515370	12515373	3
Deletion	Chr1	13146582	13146584	2
Deletion	Chr12	13403148	13403151	3
Deletion	Chr1	13607447	13607448	1
Deletion	Chr5	13859315	13859317	2
Deletion	Chr12	14662159	14662161	2
Deletion	Chr11	15126501	15126503	2
Deletion	Chr10	20851001	21101000	249999	37
Deletion	Chr7	22905979	22906031	52
Deletion	Chr6	24375188	24375195	7
Deletion	Chr5	24505496	24505499	3
Deletion	Chr3	26198506	26198507	1
Deletion	Chr8	27978207	27978208	1
Deletion	Chr3	29013294	29013298	4
Deletion	Chr1	38791933	38791938	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	17454917	17454918	2
Insertion	Chr5	838209	838209	1
Insertion	Chr6	1224326	1224327	2
Insertion	Chr2	4783111	4783111	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8503766	9421840	LOC_Os07g16160

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	10270461	Chr1	6257231
Translocation	Chr10	11709917	Chr2	18066714	LOC_Os10g22570

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