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| Mutant Information |
|---|
| Mutant Name | FN4179-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4179-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr11 | 4685759 | G-A | HET | ||
| SBS | Chr11 | 4685760 | G-A | HET | ||
| SBS | Chr11 | 4784956 | G-C | HET | ||
| SBS | Chr12 | 19896873 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g32940 |
| SBS | Chr12 | 8896044 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g15560 |
| SBS | Chr2 | 21597533 | T-A | Homo | ||
| SBS | Chr2 | 8708922 | C-A | HET | ||
| SBS | Chr3 | 18664319 | G-A | Homo | ||
| SBS | Chr3 | 18776116 | T-A | Homo | ||
| SBS | Chr4 | 10976475 | G-C | HET | ||
| SBS | Chr4 | 14439093 | G-A | Homo | ||
| SBS | Chr4 | 17076030 | G-C | HET | ||
| SBS | Chr4 | 28792179 | G-T | Homo | ||
| SBS | Chr4 | 33511067 | G-A | Homo | ||
| SBS | Chr4 | 4903966 | G-A | Homo | ||
| SBS | Chr4 | 7347523 | A-T | HET | ||
| SBS | Chr5 | 10764067 | G-C | HET | ||
| SBS | Chr5 | 5645446 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g10340 |
| SBS | Chr6 | 26933440 | A-C | HET | ||
| SBS | Chr6 | 9451517 | G-A | Homo | ||
| SBS | Chr7 | 15093790 | C-T | HET | ||
| SBS | Chr7 | 18853319 | G-T | HET | STOP_GAINED | LOC_Os07g31750 |
| SBS | Chr7 | 18853320 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g31750 |
| SBS | Chr7 | 25262442 | G-A | Homo | ||
| SBS | Chr7 | 9287618 | T-A | HET | ||
| SBS | Chr8 | 11544396 | C-T | HET | ||
| SBS | Chr8 | 20787155 | C-G | Homo | ||
| SBS | Chr8 | 6539442 | G-A | HET | ||
| SBS | Chr9 | 11356548 | C-A | HET | ||
| SBS | Chr9 | 22174997 | A-C | HET | ||
| SBS | Chr9 | 22175001 | A-C | HET | ||
| SBS | Chr9 | 4429296 | G-A | HET | ||
| SBS | Chr9 | 6164386 | C-T | HET | ||
| SBS | Chr9 | 8935113 | T-C | HET | ||
| SBS | Chr9 | 9936314 | G-A | HET |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 438763 | 438767 | 4 | |
| Deletion | Chr2 | 5446290 | 5446293 | 3 | |
| Deletion | Chr2 | 5481346 | 5481351 | 5 | |
| Deletion | Chr5 | 7286303 | 7286305 | 2 | |
| Deletion | Chr2 | 7312224 | 7312225 | 1 | |
| Deletion | Chr9 | 7798733 | 7798735 | 2 | LOC_Os09g13470 |
| Deletion | Chr3 | 8258662 | 8258667 | 5 | |
| Deletion | Chr6 | 9418336 | 9418339 | 3 | |
| Deletion | Chr10 | 9679026 | 9679031 | 5 | |
| Deletion | Chr6 | 9760810 | 9760817 | 7 | |
| Deletion | Chr10 | 10198047 | 10198048 | 1 | LOC_Os10g20280 |
| Deletion | Chr3 | 15300188 | 15300198 | 10 | |
| Deletion | Chr4 | 15414318 | 15414329 | 11 | |
| Deletion | Chr8 | 20781814 | 20781816 | 2 | |
| Deletion | Chr2 | 21990277 | 21990287 | 10 | |
| Deletion | Chr1 | 22362574 | 22362617 | 43 | |
| Deletion | Chr11 | 27328977 | 27328993 | 16 | |
| Deletion | Chr1 | 32954622 | 32954632 | 10 | |
| Deletion | Chr1 | 34648979 | 34648983 | 4 | |
| Deletion | Chr1 | 38240001 | 38262000 | 21999 | 5 |
| Deletion | Chr1 | 38284001 | 38323000 | 38999 | 10 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 19416435 | 19416440 | 6 | |
| Insertion | Chr11 | 25831477 | 25831782 | 306 | |
| Insertion | Chr7 | 12283617 | 12283620 | 4 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 429357 | Chr3 | 23730051 | LOC_Os06g01730 |
| Translocation | Chr12 | 4136909 | Chr7 | 3304292 | |
| Translocation | Chr12 | 6312000 | Chr4 | 10315830 |