Search Results

Mutant Information

Mutant Name	FN418-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN418-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3497919	C-T	HET	INTERGENIC
SBS	Chr1	3628880	G-C	HOMO	INTERGENIC
SBS	Chr1	36680017	C-T	HOMO	INTERGENIC
SBS	Chr2	14455999	T-A	HOMO	INTERGENIC
SBS	Chr2	14456000	C-A	HOMO	INTERGENIC
SBS	Chr3	15822283	C-T	HET	INTERGENIC
SBS	Chr3	17199622	G-T	HET	INTERGENIC
SBS	Chr3	17444749	G-A	HET	INTERGENIC
SBS	Chr3	21131738	A-G	HET	INTERGENIC
SBS	Chr3	25744736	G-T	HET	INTERGENIC
SBS	Chr3	31894512	G-A	HET	INTRON
SBS	Chr4	1660776	C-G	HOMO	INTERGENIC
SBS	Chr4	2797104	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05530
SBS	Chr4	23774920	C-A	HOMO	INTERGENIC
SBS	Chr4	28956080	C-A	HOMO	INTERGENIC
SBS	Chr4	32059465	C-G	HET	INTERGENIC
SBS	Chr5	8507500	T-C	HET	INTERGENIC
SBS	Chr5	15602732	G-T	HET	INTERGENIC
SBS	Chr5	15602733	T-G	HET	INTERGENIC
SBS	Chr5	15602735	G-T	HET	INTERGENIC
SBS	Chr5	19100569	G-T	HOMO	INTERGENIC
SBS	Chr6	13602806	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23290
SBS	Chr6	15273057	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g26100
SBS	Chr6	27836106	G-T	HET	INTERGENIC
SBS	Chr6	28125924	A-G	HET	INTERGENIC
SBS	Chr7	16327858	C-T	HOMO	INTERGENIC
SBS	Chr7	18431318	T-G	HET	UTR_3_PRIME
SBS	Chr7	20809168	G-T	HET	INTRON
SBS	Chr7	26833401	T-A	HOMO	INTRON
SBS	Chr8	28115870	C-T	HET	INTERGENIC
SBS	Chr9	12500137	G-A	HET	INTERGENIC
SBS	Chr9	15352149	T-A	HOMO	INTRON
SBS	Chr9	20132497	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g34110
SBS	Chr10	891275	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02440
SBS	Chr10	4934277	C-A	HOMO	INTERGENIC
SBS	Chr10	7935983	T-C	HET	INTERGENIC
SBS	Chr10	14309284	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g27150
SBS	Chr10	14451468	C-T	HET	INTERGENIC
SBS	Chr10	19559545	A-G	HET	INTERGENIC
SBS	Chr11	8667933	G-A	HET	INTRON
SBS	Chr11	9402483	C-T	HET	INTERGENIC
SBS	Chr11	18266339	A-G	HOMO	INTERGENIC
SBS	Chr11	27496739	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45410
SBS	Chr12	10317784	C-T	HET	INTERGENIC
SBS	Chr12	13089637	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1517496	1517517	21
Deletion	Chr9	3394458	3394459	1
Deletion	Chr5	4183378	4185986	2608	LOC_Os05g07764
Deletion	Chr2	4278651	4278652	1
Deletion	Chr9	5746380	5746382	2
Deletion	Chr5	7450633	7450637	4
Deletion	Chr2	7618793	7618806	13	LOC_Os02g13965
Deletion	Chr4	8050831	8050842	11	LOC_Os04g14380
Deletion	Chr1	9947516	9947519	3	LOC_Os01g17279
Deletion	Chr4	10108828	10114602	5774	3
Deletion	Chr5	11067369	11067384	15
Deletion	Chr5	11895425	11895427	2
Deletion	Chr8	14009092	14009106	14
Deletion	Chr7	15017337	15017338	1
Deletion	Chr9	15314972	15314977	5
Deletion	Chr9	15955234	15955236	2
Deletion	Chr6	16864095	16864097	2	LOC_Os06g29440
Deletion	Chr6	20485520	20485524	4
Deletion	Chr4	26808045	26808052	7
Deletion	Chr11	27355058	27355065	7
Deletion	Chr1	42689356	42689369	13	LOC_Os01g73670

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	20194941	20194942	2
Insertion	Chr12	25929890	25929893	4
Insertion	Chr1	4344845	4344845	1
Insertion	Chr10	23144919	23144919	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	19178791	Chr3	25691877	2
Translocation	Chr11	27838231	Chr7	27296787	LOC_Os07g45720

Main menu

You are here

Search Results