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| Mutant Information |
|---|
| Mutant Name | FN4180-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4180-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 9568452 | A-T | HET | ||
| SBS | Chr11 | 21312903 | G-A | Homo | STOP_GAINED | LOC_Os11g36220 |
| SBS | Chr11 | 25257824 | C-T | HET | ||
| SBS | Chr11 | 2819448 | G-A | Homo | ||
| SBS | Chr12 | 7485026 | T-C | HET | ||
| SBS | Chr2 | 10266059 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g17760 |
| SBS | Chr3 | 15653875 | C-A | Homo | ||
| SBS | Chr3 | 28739575 | C-A | HET | ||
| SBS | Chr5 | 24827877 | C-T | HET | ||
| SBS | Chr5 | 27411527 | A-T | HET | ||
| SBS | Chr5 | 28400661 | T-C | HET | ||
| SBS | Chr5 | 29596857 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g51620 |
| SBS | Chr6 | 21504118 | T-C | HET | ||
| SBS | Chr6 | 26554735 | C-T | HET | ||
| SBS | Chr6 | 27046483 | G-A | HET | ||
| SBS | Chr6 | 30766721 | G-A | HET | ||
| SBS | Chr6 | 3986435 | G-C | HET | ||
| SBS | Chr7 | 2593107 | C-T | HET | ||
| SBS | Chr8 | 23881805 | C-A | HET | ||
| SBS | Chr8 | 23881806 | T-A | HET | ||
| SBS | Chr8 | 878883 | A-T | HET | ||
| SBS | Chr8 | 9327246 | T-A | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2995001 | 3160000 | 164999 | 20 |
| Deletion | Chr10 | 3162001 | 3208000 | 45999 | 8 |
| Deletion | Chr10 | 3212001 | 3621000 | 408999 | 62 |
| Deletion | Chr12 | 11911824 | 11911825 | 1 | |
| Deletion | Chr11 | 12118512 | 12118700 | 188 | |
| Deletion | Chr10 | 16856826 | 16856835 | 9 | LOC_Os10g32100 |
| Deletion | Chr3 | 17347629 | 17347641 | 12 | LOC_Os03g30430 |
| Deletion | Chr10 | 20638001 | 20648000 | 9999 | 5 |
| Deletion | Chr11 | 23126015 | 23126023 | 8 | |
| Deletion | Chr4 | 30481314 | 30481315 | 1 | |
| Deletion | Chr2 | 34182221 | 34182222 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 21272952 | 21272954 | 3 | |
| Insertion | Chr7 | 6425782 | 6425782 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 17550692 | 17860581 | LOC_Os07g30230 |
| Inversion | Chr2 | 26774935 | 26775268 | |
| Inversion | Chr11 | 27474070 | 27474452 | LOC_Os11g45390 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 697317 | Chr11 | 650790 | |
| Translocation | Chr2 | 2071973 | Chr1 | 1499653 | 2 |
| Translocation | Chr10 | 2469383 | Chr4 | 679684 | LOC_Os04g02100 |
| Translocation | Chr12 | 4416697 | Chr8 | 18415250 | LOC_Os08g29980 |
| Translocation | Chr4 | 16668488 | Chr1 | 3149583 | 2 |
| Translocation | Chr11 | 28752368 | Chr1 | 19234999 |