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| Mutant Information |
|---|
| Mutant Name | FN4181-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4181-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29679981 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g51640 |
| SBS | Chr1 | 30959533 | T-A | HET | ||
| SBS | Chr1 | 8450756 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g15039 |
| SBS | Chr10 | 21223672 | G-A | Homo | ||
| SBS | Chr10 | 4425640 | C-T | HET | ||
| SBS | Chr10 | 7683140 | A-C | HET | ||
| SBS | Chr11 | 25784329 | G-A | Homo | ||
| SBS | Chr12 | 23002353 | G-A | Homo | ||
| SBS | Chr12 | 24162505 | G-A | Homo | ||
| SBS | Chr2 | 1301694 | G-T | HET | ||
| SBS | Chr2 | 28092901 | G-A | HET | ||
| SBS | Chr2 | 2862484 | A-G | HET | ||
| SBS | Chr3 | 14325808 | C-A | Homo | ||
| SBS | Chr3 | 14325809 | T-G | Homo | ||
| SBS | Chr3 | 31937131 | G-A | HET | ||
| SBS | Chr3 | 34352986 | G-A | Homo | ||
| SBS | Chr4 | 14317018 | A-C | HET | ||
| SBS | Chr4 | 25657269 | G-T | HET | ||
| SBS | Chr6 | 17652576 | T-A | HET | ||
| SBS | Chr6 | 6153554 | C-T | HET | ||
| SBS | Chr6 | 8892840 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g15700 |
| SBS | Chr7 | 16269579 | A-G | HET | ||
| SBS | Chr7 | 8437178 | G-T | HET | ||
| SBS | Chr7 | 9684137 | G-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 4425065 | 4425068 | 3 | LOC_Os10g08180 |
| Deletion | Chr7 | 6657815 | 6657818 | 3 | |
| Deletion | Chr5 | 6792561 | 6792563 | 2 | |
| Deletion | Chr12 | 6874013 | 6874014 | 1 | |
| Deletion | Chr3 | 7249597 | 7249601 | 4 | |
| Deletion | Chr1 | 10807833 | 10807845 | 12 | |
| Deletion | Chr3 | 13106943 | 13107034 | 91 | |
| Deletion | Chr4 | 15900628 | 15900629 | 1 | |
| Deletion | Chr2 | 16653855 | 16653865 | 10 | |
| Deletion | Chr4 | 16778001 | 16791000 | 12999 | 2 |
| Deletion | Chr12 | 17016686 | 17016687 | 1 | |
| Deletion | Chr12 | 21073470 | 21073480 | 10 | |
| Deletion | Chr5 | 23113874 | 23113881 | 7 | LOC_Os05g39410 |
| Deletion | Chr2 | 26023157 | 26023163 | 6 | |
| Deletion | Chr2 | 26380017 | 26380032 | 15 | LOC_Os02g43700 |
| Deletion | Chr11 | 26836855 | 26836859 | 4 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 10780318 | 10780319 | 2 | |
| Insertion | Chr1 | 27809054 | 27809057 | 4 | |
| Insertion | Chr1 | 32530386 | 32530387 | 2 | |
| Insertion | Chr2 | 23336959 | 23336962 | 4 | |
| Insertion | Chr4 | 16081630 | 16081632 | 3 | LOC_Os04g27210 |
| Insertion | Chr7 | 5172590 | 5172590 | 1 | |
| Insertion | Chr8 | 17916507 | 17916507 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 1216976 | 1217353 | LOC_Os03g02980 |
| Inversion | Chr9 | 14018870 | 14019157 | |
| Inversion | Chr4 | 16739831 | 16792416 | LOC_Os04g28290 |
| Inversion | Chr11 | 26567368 | 26727823 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 11831706 | Chr7 | 14037452 | LOC_Os07g24670 |
| Translocation | Chr9 | 13456026 | Chr4 | 9486028 | |
| Translocation | Chr5 | 18227544 | Chr1 | 14975601 | |
| Translocation | Chr12 | 20153354 | Chr11 | 14826899 | 2 |
| Translocation | Chr12 | 27081993 | Chr6 | 8332597 | |
| Translocation | Chr2 | 32330753 | Chr1 | 41158273 | LOC_Os01g71106 |
| Translocation | Chr2 | 32330771 | Chr1 | 41157767 | LOC_Os01g71106 |