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| Mutant Information |
|---|
| Mutant Name | FN4182-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4182-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 134021 | G-A | HET | ||
| SBS | Chr10 | 23096205 | C-T | HET | ||
| SBS | Chr11 | 18357609 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g31430 |
| SBS | Chr2 | 30281723 | A-C | HET | ||
| SBS | Chr2 | 34551898 | T-C | HET | ||
| SBS | Chr2 | 6299587 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g12120 |
| SBS | Chr3 | 11544058 | T-A | HET | ||
| SBS | Chr3 | 17223924 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30180 |
| SBS | Chr3 | 6939733 | C-T | HET | ||
| SBS | Chr5 | 16676664 | G-A | Homo | ||
| SBS | Chr5 | 17324905 | T-A | Homo | ||
| SBS | Chr5 | 17341738 | A-T | Homo | ||
| SBS | Chr5 | 27823278 | C-T | HET | ||
| SBS | Chr5 | 8702055 | C-A | HET | ||
| SBS | Chr6 | 16352557 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g28720 |
| SBS | Chr7 | 646886 | T-A | HET | ||
| SBS | Chr9 | 4310156 | G-A | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 649072 | 649073 | 1 | |
| Deletion | Chr9 | 1836060 | 1836066 | 6 | |
| Deletion | Chr1 | 2650176 | 2650342 | 166 | |
| Deletion | Chr9 | 3840604 | 3840607 | 3 | |
| Deletion | Chr11 | 5122307 | 5122310 | 3 | |
| Deletion | Chr9 | 5317016 | 5317021 | 5 | LOC_Os09g09810 |
| Deletion | Chr10 | 8646076 | 8646077 | 1 | |
| Deletion | Chr6 | 9572989 | 9572993 | 4 | |
| Deletion | Chr2 | 12037182 | 12037186 | 4 | |
| Deletion | Chr6 | 17353444 | 17353445 | 1 | |
| Deletion | Chr3 | 20499723 | 20499736 | 13 | LOC_Os03g36944 |
| Deletion | Chr12 | 27504295 | 27504299 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 9783639 | 9783639 | 1 | |
| Insertion | Chr6 | 7958756 | 7958757 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 178793 | 182819 | |
| Inversion | Chr10 | 178883 | 180286 | |
| Inversion | Chr3 | 7229966 | 7230108 | LOC_Os03g13390 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4306968 | Chr6 | 25086846 | |
| Translocation | Chr12 | 9228988 | Chr4 | 7080256 | |
| Translocation | Chr9 | 9573930 | Chr1 | 6540393 | |
| Translocation | Chr6 | 10144060 | Chr3 | 22322171 | |
| Translocation | Chr6 | 12789320 | Chr4 | 33169905 | LOC_Os04g55720 |
| Translocation | Chr6 | 12789844 | Chr4 | 33169906 | LOC_Os04g55720 |
| Translocation | Chr10 | 12990347 | Chr4 | 6716784 | |
| Translocation | Chr6 | 26890271 | Chr2 | 21623471 | |
| Translocation | Chr6 | 26890300 | Chr1 | 15444229 |