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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3460010	T-G	HET
SBS	Chr1	24012716	T-A	HET
SBS	Chr1	30565048	C-T	HET
SBS	Chr1	38343119	G-A	HET
SBS	Chr2	11380350	C-T	Homo
SBS	Chr2	11799978	T-A	Homo
SBS	Chr2	26740546	G-A	Homo
SBS	Chr3	9643743	T-A	HET
SBS	Chr3	32169790	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56440
SBS	Chr4	6106199	G-C	HET
SBS	Chr4	10029014	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18140
SBS	Chr5	15221847	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g26160
SBS	Chr5	15221848	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g26160
SBS	Chr5	25545484	G-A	HET
SBS	Chr6	13843546	T-A	HET
SBS	Chr6	14270898	C-T	Homo
SBS	Chr6	20464777	A-G	HET
SBS	Chr6	28741159	C-T	HET
SBS	Chr7	16848389	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28780
SBS	Chr7	25475125	G-A	HET
SBS	Chr8	5092012	A-G	HET
SBS	Chr8	17415149	C-T	HET
SBS	Chr8	18376167	C-T	HET
SBS	Chr8	21146435	C-T	HET
SBS	Chr9	327373	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01430
SBS	Chr9	5502247	A-G	HET
SBS	Chr9	9104138	G-A	HET
SBS	Chr9	9437757	A-G	HET
SBS	Chr9	12902467	C-T	HET
SBS	Chr10	11066372	T-A	Homo
SBS	Chr10	15340092	G-T	HET
SBS	Chr10	15721488	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30260
SBS	Chr10	18817619	C-T	HET
SBS	Chr11	15483083	A-G	HET
SBS	Chr11	21671760	C-T	HET
SBS	Chr12	26091614	T-A	HET

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	274117	274120	3
Deletion	Chr12	774057	774058	1
Deletion	Chr1	4974770	4974773	3
Deletion	Chr8	5538703	5538705	2
Deletion	Chr7	6202485	6202486	1
Deletion	Chr4	7002359	7002369	10
Deletion	Chr9	7060358	7060364	6
Deletion	Chr2	8105383	8105389	6
Deletion	Chr2	10099465	10099483	18
Deletion	Chr1	10649201	10649202	1
Deletion	Chr2	12327537	12327540	3
Deletion	Chr4	12758441	12758442	1
Deletion	Chr6	15618096	15618115	19
Deletion	Chr2	16215555	16215564	9
Deletion	Chr10	16316001	16349000	32999	2
Deletion	Chr5	16616535	16616547	12
Deletion	Chr7	18596359	18596367	8
Deletion	Chr5	18604406	18604407	1	LOC_Os05g31940
Deletion	Chr7	18949065	18949074	9
Deletion	Chr4	19166379	19166380	1
Deletion	Chr11	19209118	19209135	17
Deletion	Chr8	19652090	19652091	1
Deletion	Chr8	19869248	19869256	8	LOC_Os08g32030
Deletion	Chr3	20845457	20845474	17
Deletion	Chr12	21944858	21944865	7
Deletion	Chr5	23691837	23691840	3
Deletion	Chr8	24546001	24708000	161999	26
Deletion	Chr11	26654706	26654709	3	LOC_Os11g44150
Deletion	Chr5	27408986	27408987	1
Deletion	Chr3	29453179	29453190	11
Deletion	Chr5	29702442	29702444	2
Deletion	Chr3	31744087	31744090	3
Deletion	Chr4	32084074	32084075	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	13320890	13320891	2
Insertion	Chr1	15346254	15346407	154
Insertion	Chr2	20292057	20292176	120
Insertion	Chr3	25799900	25799970	71
Insertion	Chr5	12775513	12775513	1
Insertion	Chr6	10663870	10663935	66
Insertion	Chr11	22889740	22889815	76
Insertion	Chr12	696920	696920	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9766031	9838531
Inversion	Chr10	15836662	16345555
Inversion	Chr8	17665662	17991617	LOC_Os08g28880
Inversion	Chr8	17668306	17991620
Inversion	Chr1	31654145	31859144	LOC_Os01g55050
Inversion	Chr1	31654149	31859156	LOC_Os01g55050

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2908289	Chr8	10553493	LOC_Os09g06220
Translocation	Chr9	2909810	Chr8	10553480	LOC_Os09g06220
Translocation	Chr12	3105411	Chr3	25259154	LOC_Os12g06464
Translocation	Chr5	4616136	Chr3	5945872
Translocation	Chr8	7146011	Chr7	15823038	2
Translocation	Chr10	12580401	Chr8	14922478
Translocation	Chr6	21657632	Chr4	17922848	LOC_Os06g36770
Translocation	Chr5	28724711	Chr3	9391687	LOC_Os05g50120

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