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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13695842	G-A	HET
SBS	Chr1	15793169	T-G	Homo
SBS	Chr1	29005993	G-A	HET
SBS	Chr1	29542577	G-A	HET
SBS	Chr1	34919998	G-C	HET
SBS	Chr1	41325450	T-C	HET
SBS	Chr11	18417572	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31510
SBS	Chr11	18873839	G-A	HET
SBS	Chr11	19972079	A-C	HET
SBS	Chr11	23446167	G-C	Homo
SBS	Chr11	5733968	T-C	HET
SBS	Chr12	13370149	T-C	Homo
SBS	Chr2	11285563	G-A	Homo
SBS	Chr2	17041689	C-T	Homo
SBS	Chr2	6387602	G-C	HET
SBS	Chr2	6579241	T-C	Homo
SBS	Chr3	32893619	G-C	HET
SBS	Chr3	679989	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g02110
SBS	Chr4	10347778	A-T	HET
SBS	Chr4	16067591	A-T	Homo
SBS	Chr4	30754487	A-T	HET
SBS	Chr4	30754488	A-T	HET
SBS	Chr4	31856452	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g53496
SBS	Chr4	31856453	G-A	HET
SBS	Chr4	31856454	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g53496
SBS	Chr5	13657156	G-A	Homo
SBS	Chr5	15368861	A-T	Homo
SBS	Chr5	7556626	T-G	Homo
SBS	Chr5	7556627	T-C	Homo
SBS	Chr5	8560094	T-G	HET
SBS	Chr5	9276527	T-A	HET
SBS	Chr6	27545017	C-T	Homo
SBS	Chr7	11730358	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g20330
SBS	Chr7	26744823	T-C	Homo
SBS	Chr8	25684591	G-A	HET	STOP_GAINED	LOC_Os08g40570
SBS	Chr9	4107808	C-G	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr6	3974395	3974419	24
Deletion	Chr12	4863919	4863928	9
Deletion	Chr4	7294638	7294639	1
Deletion	Chr1	8107141	8107150	9
Deletion	Chr2	12065182	12065194	12
Deletion	Chr1	12669210	12669218	8
Deletion	Chr1	15503797	15503804	7
Deletion	Chr4	16598616	16598617	1
Deletion	Chr11	26309284	26309295	11
Deletion	Chr1	31955030	31955033	3
Deletion	Chr1	42889149	42889163	14

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26670083	26670087	5	LOC_Os01g46770
Insertion	Chr1	34047786	34047786	1
Insertion	Chr10	1412742	1412742	1
Insertion	Chr11	21129520	21129533	14
Insertion	Chr11	22104942	22104953	12
Insertion	Chr11	23637084	23637084	1
Insertion	Chr11	27010692	27010692	1
Insertion	Chr12	15721069	15721074	6
Insertion	Chr5	26651070	26651071	2
Insertion	Chr6	27127559	27127560	2
Insertion	Chr7	12594231	12594231	1
Insertion	Chr7	19025978	19025985	8
Insertion	Chr7	24530941	24530941	1
Insertion	Chr7	26105674	26105674	1
Insertion	Chr9	3909775	3909776	2	LOC_Os09g07740

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6555273	7011632	LOC_Os10g12590
Inversion	Chr10	6555274	7011635	LOC_Os10g12590
Inversion	Chr9	17447768	17469262	LOC_Os09g28740
Inversion	Chr9	17447779	17469272	LOC_Os09g28740

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1131575	Chr2	2245050	2
Translocation	Chr8	1139628	Chr2	3825319	LOC_Os08g02720
Translocation	Chr12	1482576	Chr2	9635657	LOC_Os12g03680
Translocation	Chr7	4957699	Chr1	28896027	2
Translocation	Chr7	4957960	Chr1	28896026	2
Translocation	Chr10	5623929	Chr6	8458373
Translocation	Chr8	9700385	Chr5	22608731
Translocation	Chr5	11149282	Chr4	17545687	LOC_Os04g29530
Translocation	Chr4	13338103	Chr2	2245094	LOC_Os02g04860
Translocation	Chr4	13339770	Chr3	21021250	LOC_Os03g37860
Translocation	Chr6	16399197	Chr2	26377474
Translocation	Chr7	17505067	Chr5	24133852	2
Translocation	Chr7	17505327	Chr5	24133851	2
Translocation	Chr5	17627891	Chr1	42980730
Translocation	Chr11	20079919	Chr6	19269355
Translocation	Chr11	22570659	Chr7	4765763	LOC_Os11g38050
Translocation	Chr7	23767442	Chr1	20739018	2
Translocation	Chr11	26139354	Chr9	13620998

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