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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14967737	T-A	HET
SBS	Chr1	19532389	A-G	Homo
SBS	Chr1	20913273	C-T	HET
SBS	Chr1	28668189	C-T	HET
SBS	Chr1	37177736	C-A	HET
SBS	Chr1	42835514	C-T	HET
SBS	Chr1	5431652	T-A	HET
SBS	Chr10	20258249	G-T	HET
SBS	Chr11	11478366	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19950
SBS	Chr11	11478367	C-T	HET
SBS	Chr11	20379380	G-A	HET
SBS	Chr11	23385509	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g39270
SBS	Chr12	8234341	G-T	HET
SBS	Chr3	10434228	G-A	Homo
SBS	Chr3	10434241	C-T	Homo
SBS	Chr3	4769440	G-C	HET
SBS	Chr4	33948788	C-T	Homo
SBS	Chr5	28654205	T-C	Homo
SBS	Chr5	7492881	T-C	HET
SBS	Chr7	17062032	T-A	HET
SBS	Chr7	23782877	C-A	Homo
SBS	Chr7	23782878	T-C	Homo
SBS	Chr7	26517220	A-G	Homo
SBS	Chr8	6685630	T-C	Homo
SBS	Chr9	10343721	G-A	HET
SBS	Chr9	15393765	C-T	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	833619	833620	1
Deletion	Chr2	954137	954140	3	LOC_Os02g02600
Deletion	Chr9	4337283	4337295	12
Deletion	Chr2	6166098	6166102	4
Deletion	Chr6	6712802	6712832	30	LOC_Os06g12380
Deletion	Chr4	7776750	7776752	2
Deletion	Chr11	12317372	12317373	1
Deletion	Chr11	12858001	12945000	86999	12
Deletion	Chr11	14138001	14309000	170999	28
Deletion	Chr6	14294041	14294042	1
Deletion	Chr11	14561001	15171000	609999	85
Deletion	Chr1	16604566	16604568	2
Deletion	Chr4	17206314	17206315	1
Deletion	Chr11	17664140	17664141	1	LOC_Os11g30390
Deletion	Chr7	18658001	18904000	245999	30
Deletion	Chr11	20144014	20144028	14
Deletion	Chr11	24091669	24091685	16	LOC_Os11g40410

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	28207287	28207290	4
Insertion	Chr11	15041320	15041320	1
Insertion	Chr11	3199331	3199374	44
Insertion	Chr12	10369028	10369029	2
Insertion	Chr12	20711488	20711495	8
Insertion	Chr2	32483158	32483158	1
Insertion	Chr4	13544345	13544345	1
Insertion	Chr7	171740	171743	4
Insertion	Chr7	7702254	7702254	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2689375	3321236
Inversion	Chr3	2689757	3321255
Inversion	Chr4	14274738	15016854
Inversion	Chr6	27440548	27766892	LOC_Os06g45380
Inversion	Chr6	27440551	27766952	LOC_Os06g45380

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	34044	Chr3	16882264	2
Translocation	Chr7	487208	Chr2	13856910
Translocation	Chr7	506364	Chr2	13856904	LOC_Os07g01850
Translocation	Chr6	10194145	Chr2	30977614
Translocation	Chr11	12946815	Chr8	20361122	2
Translocation	Chr9	13255684	Chr8	3855240
Translocation	Chr11	16342343	Chr1	19382825	2
Translocation	Chr11	16342564	Chr1	19382839	2
Translocation	Chr9	18185388	Chr1	10303183	LOC_Os09g29910
Translocation	Chr8	23292820	Chr3	2689753	LOC_Os08g36860
Translocation	Chr8	23292827	Chr3	2689383	LOC_Os08g36860

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