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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25673649	A-T	HET	INTERGENIC
SBS	Chr2	13483705	G-A	HOMO	INTERGENIC
SBS	Chr3	2490936	A-C	HET	INTERGENIC
SBS	Chr3	4464685	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g08660
SBS	Chr3	9882698	G-C	HET	INTERGENIC
SBS	Chr3	13500937	C-G	HET	INTERGENIC
SBS	Chr3	14120456	T-G	HET	INTERGENIC
SBS	Chr3	27054328	T-A	HOMO	INTERGENIC
SBS	Chr4	8973869	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	20355714	G-A	HET	INTERGENIC
SBS	Chr5	5526584	G-T	HET	INTERGENIC
SBS	Chr5	5772308	A-T	HET	INTERGENIC
SBS	Chr5	11032422	C-T	HOMO	INTERGENIC
SBS	Chr5	25330214	A-G	HOMO	INTRON
SBS	Chr6	11374338	A-T	HET	INTERGENIC
SBS	Chr6	15553460	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g27470
SBS	Chr7	2452854	A-C	HOMO	INTERGENIC
SBS	Chr7	10483236	G-A	HET	INTERGENIC
SBS	Chr7	20933386	C-A	HET	UTR_5_PRIME
SBS	Chr8	18713464	T-A	HOMO	INTERGENIC
SBS	Chr8	25915231	C-T	HOMO	INTERGENIC
SBS	Chr9	15330493	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25550
SBS	Chr11	12788717	G-A	HOMO	STOP_GAINED	LOC_Os11g22310
SBS	Chr11	28925320	G-T	HET	INTERGENIC
SBS	Chr12	9128388	G-A	HOMO	INTERGENIC
SBS	Chr12	19173519	T-C	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	641497	641503	6
Deletion	Chr1	4752810	4752815	5
Deletion	Chr5	4910706	4910707	1
Deletion	Chr4	6046711	6046727	16	LOC_Os04g11110
Deletion	Chr10	6693783	6693788	5
Deletion	Chr3	7776416	7776430	14
Deletion	Chr1	9416732	9416736	4
Deletion	Chr3	9863062	9863065	3
Deletion	Chr6	12115533	12115534	1
Deletion	Chr7	12603793	12603799	6
Deletion	Chr3	12849298	12849301	3
Deletion	Chr3	13921528	13921535	7
Deletion	Chr4	17152001	17715000	563000	66
Deletion	Chr2	18827745	18827746	1
Deletion	Chr9	21521327	21521344	17
Deletion	Chr2	28160448	28160478	30	LOC_Os02g46220
Deletion	Chr1	28798612	28798629	17
Deletion	Chr4	32428015	32428016	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	17599177	17599180	4
Insertion	Chr6	22672325	22672327	3
Insertion	Chr8	10678210	10678211	2
Insertion	Chr11	1696953	1696953	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11063258	26136400
Inversion	Chr4	14805512	27068899	LOC_Os04g25540
Inversion	Chr2	23859328	23979292
Inversion	Chr1	29247427	29759499	LOC_Os01g50934
Inversion	Chr1	29247441	29759504	LOC_Os01g50934

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1583080	Chr4	14799847	LOC_Os11g03940
Translocation	Chr11	4925844	Chr5	19143977
Translocation	Chr11	5263385	Chr6	8104695	LOC_Os11g09840
Translocation	Chr11	10215561	Chr10	12873002	2
Translocation	Chr8	13400115	Chr1	20870457	2
Translocation	Chr7	14630613	Chr4	17151576	LOC_Os04g28930
Translocation	Chr7	17346711	Chr3	10411141
Translocation	Chr7	17347274	Chr3	10411104
Translocation	Chr4	27070228	Chr3	8934363

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