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| Mutant Information |
|---|
| Mutant Name | FN4201-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4201-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16998698 | C-T | Homo | ||
| SBS | Chr1 | 27238700 | G-C | HET | ||
| SBS | Chr10 | 14813865 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g28470 |
| SBS | Chr10 | 2729817 | G-C | HET | ||
| SBS | Chr12 | 1720970 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04110 |
| SBS | Chr2 | 15337776 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g26110 |
| SBS | Chr2 | 25575228 | C-T | HET | ||
| SBS | Chr2 | 30690517 | G-A | HET | ||
| SBS | Chr2 | 7400195 | G-T | Homo | ||
| SBS | Chr2 | 9968341 | C-A | Homo | ||
| SBS | Chr3 | 30907423 | C-T | Homo | ||
| SBS | Chr3 | 35663492 | G-A | Homo | ||
| SBS | Chr3 | 35991446 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g63750 |
| SBS | Chr4 | 31839381 | A-C | HET | ||
| SBS | Chr4 | 32522917 | G-T | HET | ||
| SBS | Chr4 | 8316033 | T-A | Homo | ||
| SBS | Chr5 | 18550514 | T-G | HET | ||
| SBS | Chr5 | 20002434 | C-T | HET | ||
| SBS | Chr5 | 27200736 | T-C | HET | ||
| SBS | Chr6 | 10397248 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g17910 |
| SBS | Chr6 | 1072319 | C-A | HET | ||
| SBS | Chr6 | 15377888 | A-C | Homo | ||
| SBS | Chr6 | 1601473 | C-T | HET | ||
| SBS | Chr6 | 17800848 | G-A | Homo | ||
| SBS | Chr6 | 3743835 | T-A | HET | ||
| SBS | Chr7 | 2907825 | A-G | Homo | ||
| SBS | Chr7 | 9493790 | C-A | HET | ||
| SBS | Chr8 | 21376114 | T-C | HET | ||
| SBS | Chr9 | 13324454 | A-T | HET | ||
| SBS | Chr9 | 15518975 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g25870 |
| SBS | Chr9 | 3263211 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g06820 |
| SBS | Chr9 | 9975772 | A-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 236842 | 236847 | 5 | |
| Deletion | Chr1 | 571635 | 571639 | 4 | LOC_Os01g02050 |
| Deletion | Chr7 | 3413529 | 3413538 | 9 | |
| Deletion | Chr7 | 5872400 | 5872404 | 4 | |
| Deletion | Chr5 | 10798572 | 10798573 | 1 | |
| Deletion | Chr7 | 12229819 | 12229820 | 1 | |
| Deletion | Chr11 | 18731356 | 18731357 | 1 | |
| Deletion | Chr11 | 23210059 | 23210062 | 3 | |
| Deletion | Chr3 | 26038531 | 26038537 | 6 | |
| Deletion | Chr4 | 28278665 | 28278880 | 215 | LOC_Os04g47650 |
| Deletion | Chr3 | 35032123 | 35032125 | 2 | |
| Deletion | Chr1 | 39222378 | 39222390 | 12 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 9674776 | 9674779 | 4 | |
| Insertion | Chr11 | 10796048 | 10796049 | 2 | |
| Insertion | Chr2 | 16137945 | 16137945 | 1 | |
| Insertion | Chr3 | 27464794 | 27464795 | 2 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 25961191 | Chr1 | 3546073 | |
| Translocation | Chr11 | 28092414 | Chr7 | 21747242 |