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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	573804	C-T	HET
SBS	Chr1	5755738	A-C	Homo
SBS	Chr1	10781937	G-A	Homo
SBS	Chr1	20155609	G-C	HET
SBS	Chr1	30813919	G-A	HET
SBS	Chr1	33841007	A-G	HET
SBS	Chr2	9382783	G-C	Homo
SBS	Chr2	9816387	C-A	HET
SBS	Chr2	9816825	G-T	HET
SBS	Chr2	20999626	T-C	HET
SBS	Chr2	28259984	C-T	HET
SBS	Chr2	29079292	C-T	HET
SBS	Chr3	26083872	A-G	HET
SBS	Chr4	945077	C-G	Homo
SBS	Chr4	10160248	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18400
SBS	Chr4	11798026	T-A	Homo
SBS	Chr4	18241988	A-T	Homo
SBS	Chr5	10399147	G-A	Homo
SBS	Chr5	13398004	G-T	HET
SBS	Chr5	22823145	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g38920
SBS	Chr6	1161299	C-A	HET
SBS	Chr6	4126068	G-A	Homo
SBS	Chr6	8452770	C-G	Homo
SBS	Chr6	8848204	G-T	HET
SBS	Chr6	21380316	T-C	HET
SBS	Chr7	2448776	C-T	HET
SBS	Chr7	2703318	A-T	HET
SBS	Chr7	16364611	C-A	HET
SBS	Chr8	2798458	C-T	HET
SBS	Chr8	15700259	G-A	Homo
SBS	Chr8	23156725	G-A	Homo
SBS	Chr9	5041037	A-T	Homo
SBS	Chr9	18819918	G-A	HET
SBS	Chr10	8334627	A-G	HET
SBS	Chr10	18124939	C-T	Homo
SBS	Chr10	19136257	C-T	HET
SBS	Chr10	23084333	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42800
SBS	Chr11	6190999	C-A	HET
SBS	Chr11	7496515	T-C	HET
SBS	Chr11	7868216	G-A	HET
SBS	Chr11	15817398	G-T	HET
SBS	Chr11	16493460	G-A	HET
SBS	Chr12	21183679	C-T	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1128034	1128044	10
Deletion	Chr11	1339556	1339558	2
Deletion	Chr7	2866930	2866938	8
Deletion	Chr9	5037249	5037260	11
Deletion	Chr5	5461427	5461433	6
Deletion	Chr1	5918097	5918099	2
Deletion	Chr3	7364263	7364264	1
Deletion	Chr11	10504689	10504691	2
Deletion	Chr10	12413620	12413627	7
Deletion	Chr3	14641870	14641872	2	LOC_Os03g25590
Deletion	Chr12	15036374	15036386	12
Deletion	Chr8	16645887	16645888	1	LOC_Os08g27260
Deletion	Chr7	22227858	22227860	2
Deletion	Chr7	22748973	22748977	4
Deletion	Chr10	23182071	23182074	3
Deletion	Chr11	25527122	25527124	2
Deletion	Chr11	25619120	25619123	3
Deletion	Chr7	27738200	27738204	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	17891331	17891352	22

Inversions: 16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5654386	5654554	LOC_Os01g10590
Inversion	Chr5	6389311	6517965
Inversion	Chr5	6389324	6518004
Inversion	Chr9	9249626	9250024
Inversion	Chr4	16218185	16218306	LOC_Os04g27430
Inversion	Chr9	16263597	16908027	LOC_Os09g26770
Inversion	Chr9	16908026	17013552	LOC_Os09g28019
Inversion	Chr9	20686346	20735096
Inversion	Chr9	20686382	20735105
Inversion	Chr7	23179032	23195631	2
Inversion	Chr7	23179045	23195636	2
Inversion	Chr7	23799567	24269690	2
Inversion	Chr7	23799596	24273855	LOC_Os07g39710
Inversion	Chr7	24967572	25019196	LOC_Os07g41660
Inversion	Chr7	24967594	25019207	LOC_Os07g41660
Inversion	Chr6	27471736	27471931	LOC_Os06g45440

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4907894	Chr4	7638606	LOC_Os04g13690
Translocation	Chr6	9792191	Chr1	35283744	2
Translocation	Chr4	15389599	Chr3	12937386
Translocation	Chr8	18080588	Chr5	10967080	LOC_Os05g18890
Translocation	Chr12	21947128	Chr3	12937387
Translocation	Chr11	28681302	Chr4	575035

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