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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11900591	G-C	Homo
SBS	Chr1	15198651	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27250
SBS	Chr1	15198652	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27250
SBS	Chr1	20114993	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g36280
SBS	Chr1	6947416	T-A	HET
SBS	Chr1	7390157	T-A	Homo
SBS	Chr1	7723436	G-A	Homo
SBS	Chr1	7723437	C-A	Homo
SBS	Chr1	7723438	C-A	Homo
SBS	Chr10	13600694	G-A	HET
SBS	Chr10	4436794	T-G	HET
SBS	Chr11	9966118	A-T	HET
SBS	Chr12	2809461	T-C	HET
SBS	Chr12	3374150	G-T	HET
SBS	Chr12	5449110	C-T	HET
SBS	Chr2	18858921	T-A	Homo
SBS	Chr2	20098711	C-T	Homo
SBS	Chr2	21768890	C-T	Homo
SBS	Chr2	25981102	T-C	Homo
SBS	Chr3	20617520	G-A	HET
SBS	Chr3	27551893	C-G	Homo
SBS	Chr3	34962801	C-T	HET
SBS	Chr3	5547881	G-A	HET
SBS	Chr4	18569555	C-A	HET
SBS	Chr4	18569556	A-T	HET
SBS	Chr4	6759815	G-A	HET
SBS	Chr4	7885054	T-C	Homo
SBS	Chr5	9593788	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16824
SBS	Chr6	15639039	T-C	Homo
SBS	Chr7	14027673	T-A	HET
SBS	Chr7	23045924	G-A	HET
SBS	Chr7	3638529	G-A	Homo
SBS	Chr7	6950892	G-A	Homo
SBS	Chr7	914496	A-G	HET
SBS	Chr8	27312178	T-C	HET
SBS	Chr9	13503356	G-A	Homo
SBS	Chr9	1580032	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g03290
SBS	Chr9	16051478	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26550

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	929532	929535	3
Deletion	Chr8	1750168	1750173	5	LOC_Os08g03676
Deletion	Chr6	3220677	3220679	2	LOC_Os06g06820
Deletion	Chr7	4644141	4644153	12	LOC_Os07g08930
Deletion	Chr4	4958227	4958531	304	LOC_Os04g09330
Deletion	Chr3	5302870	5302874	4
Deletion	Chr1	7103657	7103665	8
Deletion	Chr5	7217574	7217575	1
Deletion	Chr1	8420422	8420434	12
Deletion	Chr6	8658940	8658960	20
Deletion	Chr8	9391650	9391665	15
Deletion	Chr9	9556527	9556540	13
Deletion	Chr7	11176901	11176906	5
Deletion	Chr1	11315449	11315458	9
Deletion	Chr12	12431539	12431550	11
Deletion	Chr11	13944420	13944445	25	LOC_Os11g24450
Deletion	Chr9	17016894	17016902	8
Deletion	Chr8	17592074	17592080	6	LOC_Os08g28750
Deletion	Chr2	20098733	20098734	1
Deletion	Chr2	20595243	20595247	4
Deletion	Chr1	21208774	21208778	4	LOC_Os01g37880
Deletion	Chr11	24204485	24204501	16
Deletion	Chr1	29984215	29984216	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	14811315	14811317	3	LOC_Os10g28460
Insertion	Chr2	30941300	30941309	10
Insertion	Chr2	8352838	8352967	130

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2906293	3854185	LOC_Os10g05770
Inversion	Chr10	2906303	3854192	LOC_Os10g05770
Inversion	Chr9	20238698	20239017	LOC_Os09g34280

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4012170	Chr1	5474318

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