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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10906637	A-T	HET
SBS	Chr1	35026244	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60590
SBS	Chr1	35026528	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60590
SBS	Chr1	6950860	T-G	HET
SBS	Chr11	923245	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02780
SBS	Chr12	7591899	C-T	Homo
SBS	Chr2	15816257	C-T	Homo
SBS	Chr3	15942948	T-A	Homo
SBS	Chr3	25008241	T-C	HET
SBS	Chr3	26590487	C-T	HET
SBS	Chr3	28013903	C-A	Homo
SBS	Chr3	32312070	G-A	Homo
SBS	Chr4	10723060	G-A	HET
SBS	Chr4	11567074	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20670
SBS	Chr4	23390513	C-G	Homo
SBS	Chr4	24323510	C-A	Homo
SBS	Chr4	30122739	C-T	Homo
SBS	Chr4	5220045	T-C	HET
SBS	Chr4	8520812	C-T	Homo
SBS	Chr5	7407708	C-T	HET
SBS	Chr5	9838833	A-G	HET
SBS	Chr7	18384012	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31050
SBS	Chr7	22374105	A-G	Homo
SBS	Chr7	9863225	G-A	HET
SBS	Chr8	13773642	C-T	HET
SBS	Chr8	16185260	G-A	HET
SBS	Chr8	25536255	A-T	HET
SBS	Chr8	2563768	C-T	HET
SBS	Chr8	26248236	A-C	HET
SBS	Chr9	1002341	T-C	HET
SBS	Chr9	1254066	C-T	HET
SBS	Chr9	2347206	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04420

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	34796	34805	9	LOC_Os03g01040
Deletion	Chr7	750001	883000	132999	22
Deletion	Chr7	885001	1199000	313999	61
Deletion	Chr11	2966242	2966247	5	LOC_Os11g06210
Deletion	Chr12	4840918	4840919	1
Deletion	Chr3	6818643	6818645	2
Deletion	Chr1	7214730	7214731	1
Deletion	Chr5	7264824	7264844	20
Deletion	Chr2	9218025	9218037	12	LOC_Os02g16220
Deletion	Chr5	11307463	11307474	11	LOC_Os05g19460
Deletion	Chr7	12156938	12156939	1
Deletion	Chr7	12606124	12606128	4
Deletion	Chr1	14354347	14354348	1
Deletion	Chr11	15449037	15449059	22	LOC_Os11g26890
Deletion	Chr7	18512149	18512155	6
Deletion	Chr3	19568002	19568157	155
Deletion	Chr6	20183001	20236000	52999	7
Deletion	Chr12	21672594	21672595	1
Deletion	Chr6	21793963	21793975	12
Deletion	Chr12	22705576	22705577	1
Deletion	Chr1	42021836	42021842	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	1530231	1530232	2
Insertion	Chr7	21737623	21737623	1
Insertion	Chr8	18425940	18425940	1
Insertion	Chr8	18790086	18790135	50

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr6	13409743	14116149
Inversion	Chr6	13409744	14116152
Inversion	Chr3	26030126	26471143
Inversion	Chr3	26335035	26471137

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7196217	Chr1	9691049	LOC_Os01g16950
Translocation	Chr7	12408461	Chr1	27404387
Translocation	Chr9	15074541	Chr6	4406867
Translocation	Chr8	17661167	Chr4	11303323
Translocation	Chr12	18589122	Chr1	39127628
Translocation	Chr12	25725785	Chr2	9237573	LOC_Os02g16240
Translocation	Chr7	25914298	Chr3	26030109
Translocation	Chr7	25914310	Chr3	26029578	LOC_Os03g46052
Translocation	Chr11	28239950	Chr7	25183143	LOC_Os11g46980

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