Search Results
| Mutant Information |
|---|
| Mutant Name | FN4208-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4208-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31027213 | A-G | HET | ||
| SBS | Chr2 | 23022063 | G-A | HET | ||
| SBS | Chr2 | 26304188 | T-G | HET | ||
| SBS | Chr2 | 31526467 | T-A | HET | ||
| SBS | Chr3 | 9803569 | A-T | HET | ||
| SBS | Chr3 | 9803570 | G-T | HET | ||
| SBS | Chr3 | 20321515 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g36640 |
| SBS | Chr3 | 32523406 | G-C | HET | ||
| SBS | Chr3 | 35098263 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g61910 |
| SBS | Chr4 | 18921891 | C-T | Homo | ||
| SBS | Chr4 | 23624265 | G-T | Homo | ||
| SBS | Chr4 | 24531126 | T-A | HET | ||
| SBS | Chr4 | 24694439 | A-T | HET | ||
| SBS | Chr4 | 30882293 | G-A | Homo | ||
| SBS | Chr5 | 20366792 | C-T | HET | ||
| SBS | Chr5 | 22483446 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g38350 |
| SBS | Chr6 | 11071952 | T-C | HET | ||
| SBS | Chr6 | 12872860 | T-C | HET | ||
| SBS | Chr6 | 19770597 | G-A | HET | ||
| SBS | Chr7 | 7663914 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g13350 |
| SBS | Chr7 | 10285228 | C-T | Homo | ||
| SBS | Chr7 | 10833693 | G-A | HET | ||
| SBS | Chr7 | 22400258 | G-C | Homo | ||
| SBS | Chr8 | 3943807 | T-C | HET | ||
| SBS | Chr8 | 17441337 | T-C | Homo | ||
| SBS | Chr10 | 4774298 | C-T | HET | ||
| SBS | Chr10 | 12934471 | A-T | Homo | ||
| SBS | Chr11 | 10386862 | A-T | HET | ||
| SBS | Chr12 | 12910949 | C-A | HET | ||
| SBS | Chr12 | 24424059 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g39580 |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4975499 | 4975503 | 4 | |
| Deletion | Chr7 | 5986713 | 5986747 | 34 | LOC_Os07g10930 |
| Deletion | Chr5 | 18706226 | 18706251 | 25 | |
| Deletion | Chr3 | 18776042 | 18776045 | 3 | LOC_Os03g32810 |
| Deletion | Chr3 | 20889277 | 20889280 | 3 | |
| Deletion | Chr9 | 21442116 | 21442151 | 35 | LOC_Os09g37170 |
| Deletion | Chr7 | 21611232 | 21611234 | 2 | |
| Deletion | Chr6 | 22433238 | 22433239 | 1 | |
| Deletion | Chr10 | 22484001 | 22537000 | 52999 | 10 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 3959845 | 3959846 | 2 | |
| Insertion | Chr12 | 17867330 | 17867331 | 2 | |
| Insertion | Chr6 | 9622238 | 9622239 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 22483136 | 22501109 | LOC_Os10g41770 |
| Inversion | Chr11 | 27313305 | 27313690 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 6006258 | Chr2 | 33511280 | |
| Translocation | Chr5 | 6006267 | Chr2 | 33557221 | |
| Translocation | Chr4 | 8943790 | Chr1 | 2012126 | |
| Translocation | Chr9 | 9357365 | Chr6 | 29946007 | LOC_Os06g49420 |
| Translocation | Chr10 | 19195943 | Chr4 | 18880934 | |
| Translocation | Chr10 | 19195946 | Chr4 | 20397856 | |
| Translocation | Chr6 | 19659974 | Chr2 | 7526445 | |
| Translocation | Chr10 | 22482926 | Chr2 | 33557227 | 2 |
| Translocation | Chr10 | 22501095 | Chr6 | 6993338 | LOC_Os06g12790 |
| Translocation | Chr10 | 22535284 | Chr2 | 33559359 |