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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37173534	A-G	HOMO	INTERGENIC
SBS	Chr10	12384436	C-T	HET	INTERGENIC
SBS	Chr10	7176925	G-A	HET	INTRON
SBS	Chr11	11736370	T-A	HOMO	UTR_3_PRIME
SBS	Chr11	20844282	T-A	HET	INTERGENIC
SBS	Chr11	20844283	G-A	HET	INTERGENIC
SBS	Chr11	21974675	G-A	HOMO	INTERGENIC
SBS	Chr11	408027	T-C	HOMO	INTERGENIC
SBS	Chr11	8380402	A-G	HOMO	INTRON
SBS	Chr11	8383809	A-G	HOMO	INTERGENIC
SBS	Chr12	15102849	A-G	HET	INTERGENIC
SBS	Chr12	9675855	A-T	HET	INTERGENIC
SBS	Chr2	7245792	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g13520
SBS	Chr3	11688825	C-T	HOMO	INTERGENIC
SBS	Chr3	11688826	A-T	HOMO	INTERGENIC
SBS	Chr3	21471556	G-A	HET	INTERGENIC
SBS	Chr3	22370702	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40250
SBS	Chr4	9895755	C-T	HET	INTRON
SBS	Chr5	24587411	C-T	HET	START_GAINED	LOC_Os05g42000
SBS	Chr5	3579824	G-T	HET	INTERGENIC
SBS	Chr5	7913838	C-T	HET	INTRON
SBS	Chr5	8173000	C-T	HET	INTERGENIC
SBS	Chr6	21833838	C-T	HET	INTERGENIC
SBS	Chr6	29213894	C-T	HET	INTERGENIC
SBS	Chr6	30022972	G-A	HET	INTERGENIC
SBS	Chr6	8015794	G-A	HOMO	INTERGENIC
SBS	Chr7	23902626	A-G	HOMO	INTERGENIC
SBS	Chr8	3523438	T-C	HET	INTRON
SBS	Chr9	13633318	A-T	HET	INTRON
SBS	Chr9	16181386	A-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1246984	1246995	11
Deletion	Chr6	2484438	2484439	1
Deletion	Chr10	3329931	3329966	35
Deletion	Chr8	3517972	3517978	6	LOC_Os08g06344
Deletion	Chr5	4554365	4554373	8
Deletion	Chr2	7245785	7245786	1	LOC_Os02g13520
Deletion	Chr9	10165791	10247728	81937	19
Deletion	Chr5	11695059	11695060	1
Deletion	Chr6	12630193	12630195	2
Deletion	Chr6	13504884	13504895	11
Deletion	Chr7	15837631	15837641	10
Deletion	Chr6	16478565	16478572	7
Deletion	Chr8	22482373	22482384	11
Deletion	Chr8	22842306	22842315	9
Deletion	Chr12	23596784	23596785	1
Deletion	Chr3	31165420	31165425	5
Deletion	Chr1	33071571	33071590	19
Deletion	Chr4	35181057	35181058	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	25431737	25431737	1
Insertion	Chr5	29373812	29373812	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	21869679	22174765	LOC_Os10g41260
Inversion	Chr1	29814882	34448233	LOC_Os01g59570

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	5525819	Chr2	3164262
Translocation	Chr4	5525831	Chr2	3164739	LOC_Os02g06330
Translocation	Chr11	13259842	Chr4	10208284	LOC_Os04g18470
Translocation	Chr8	16379184	Chr7	24482204
Translocation	Chr6	19261029	Chr2	1391897	LOC_Os02g03410
Translocation	Chr6	19949927	Chr4	7108206	LOC_Os06g34270
Translocation	Chr6	19950437	Chr4	7108203

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