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| Mutant Information |
|---|
| Mutant Name | FN4221-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4221-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17131633 | A-T | Homo | ||
| SBS | Chr1 | 30232411 | G-A | HET | ||
| SBS | Chr1 | 31858293 | A-G | HET | ||
| SBS | Chr1 | 34858707 | G-A | HET | ||
| SBS | Chr1 | 35631281 | A-T | HET | ||
| SBS | Chr1 | 4280264 | A-G | HET | ||
| SBS | Chr1 | 5156500 | A-T | HET | ||
| SBS | Chr10 | 5060227 | C-G | Homo | ||
| SBS | Chr11 | 10991446 | C-A | HET | ||
| SBS | Chr11 | 11789392 | A-T | HET | ||
| SBS | Chr11 | 13210736 | G-T | HET | ||
| SBS | Chr11 | 7288450 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g12850 |
| SBS | Chr12 | 11712069 | T-C | HET | ||
| SBS | Chr12 | 22211881 | C-T | HET | STOP_GAINED | LOC_Os12g36260 |
| SBS | Chr12 | 22629002 | A-T | HET | ||
| SBS | Chr3 | 11562888 | C-A | HET | ||
| SBS | Chr3 | 12041115 | T-C | HET | ||
| SBS | Chr3 | 18990515 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g33200 |
| SBS | Chr3 | 22671098 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g40780 |
| SBS | Chr3 | 376572 | G-T | Homo | ||
| SBS | Chr3 | 6222962 | C-A | HET | ||
| SBS | Chr4 | 13167019 | A-T | Homo | ||
| SBS | Chr4 | 18139934 | T-A | HET | ||
| SBS | Chr5 | 17155133 | G-A | Homo | ||
| SBS | Chr5 | 27003783 | C-G | HET | ||
| SBS | Chr6 | 13468531 | A-G | HET | ||
| SBS | Chr6 | 29843929 | G-A | Homo | ||
| SBS | Chr6 | 9356898 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g16390 |
| SBS | Chr7 | 1437986 | G-C | HET | ||
| SBS | Chr7 | 20102403 | C-T | HET | ||
| SBS | Chr7 | 2201273 | T-A | HET | ||
| SBS | Chr7 | 24256724 | G-A | HET | ||
| SBS | Chr7 | 4097169 | A-G | HET | ||
| SBS | Chr7 | 7762954 | C-T | HET | ||
| SBS | Chr8 | 2895755 | G-A | Homo | ||
| SBS | Chr8 | 6822450 | T-A | Homo | ||
| SBS | Chr9 | 3350229 | C-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 668177 | 668203 | 26 | |
| Deletion | Chr11 | 4510050 | 4510051 | 1 | LOC_Os11g08536 |
| Deletion | Chr5 | 4822001 | 4832000 | 9999 | 2 |
| Deletion | Chr4 | 4939835 | 4939837 | 2 | |
| Deletion | Chr6 | 5724539 | 5724540 | 1 | LOC_Os06g10960 |
| Deletion | Chr5 | 9966119 | 9966132 | 13 | |
| Deletion | Chr10 | 13635932 | 13635941 | 9 | |
| Deletion | Chr5 | 18983024 | 18983032 | 8 | |
| Deletion | Chr2 | 23573729 | 23573730 | 1 | |
| Deletion | Chr4 | 25285438 | 25285439 | 1 | |
| Deletion | Chr4 | 30605001 | 30655000 | 49999 | 9 |
| Deletion | Chr1 | 39586498 | 39586506 | 8 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 30663451 | 30663451 | 1 | |
| Insertion | Chr4 | 9009195 | 9009195 | 1 | LOC_Os04g16570 |
| Insertion | Chr5 | 18856002 | 18856006 | 5 | |
| Insertion | Chr7 | 1308316 | 1308589 | 274 | |
| Insertion | Chr8 | 2334689 | 2334690 | 2 |
No Inversion
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1409116 | Chr1 | 23461414 | LOC_Os01g41440 |
| Translocation | Chr5 | 4884717 | Chr2 | 26265896 | |
| Translocation | Chr5 | 4885371 | Chr2 | 26181822 | LOC_Os02g43390 |
| Translocation | Chr10 | 7685655 | Chr6 | 5168933 | 2 |
| Translocation | Chr9 | 19208099 | Chr5 | 10528297 | 2 |
| Translocation | Chr11 | 21235135 | Chr9 | 16683140 | 2 |
| Translocation | Chr11 | 21236122 | Chr9 | 16683127 | LOC_Os09g27470 |
| Translocation | Chr12 | 21962545 | Chr1 | 11341442 | |
| Translocation | Chr4 | 25986492 | Chr2 | 18076919 | 2 |