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Mutant Information |
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Mutant Name | FN4224-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4224-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 36
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2521634 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g05340 |
SBS | Chr1 | 2521635 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g05340 |
SBS | Chr1 | 13830483 | C-A | Homo | ||
SBS | Chr1 | 18911546 | T-A | Homo | ||
SBS | Chr1 | 21428496 | C-G | HET | ||
SBS | Chr1 | 29487036 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g51290 |
SBS | Chr2 | 7244836 | A-G | HET | ||
SBS | Chr2 | 10513758 | C-G | HET | ||
SBS | Chr2 | 28850493 | T-A | Homo | ||
SBS | Chr2 | 29501947 | A-G | Homo | ||
SBS | Chr2 | 32993161 | T-A | Homo | ||
SBS | Chr3 | 2628018 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g05360 |
SBS | Chr3 | 7329775 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g13560 |
SBS | Chr3 | 30354147 | G-T | Homo | ||
SBS | Chr4 | 2322948 | C-G | Homo | ||
SBS | Chr4 | 15478878 | G-A | HET | ||
SBS | Chr4 | 27471659 | G-A | HET | ||
SBS | Chr5 | 15305393 | G-A | HET | ||
SBS | Chr5 | 21900524 | G-A | HET | ||
SBS | Chr5 | 25034048 | G-A | HET | ||
SBS | Chr6 | 1746450 | G-A | Homo | ||
SBS | Chr6 | 4826766 | G-A | HET | ||
SBS | Chr6 | 7797539 | G-C | HET | ||
SBS | Chr6 | 14071278 | A-G | HET | ||
SBS | Chr6 | 14076674 | C-A | HET | ||
SBS | Chr7 | 26145714 | C-T | HET | ||
SBS | Chr8 | 7469694 | T-C | HET | ||
SBS | Chr8 | 8432923 | T-C | HET | ||
SBS | Chr8 | 17124184 | G-C | HET | ||
SBS | Chr9 | 6895230 | G-A | HET | ||
SBS | Chr9 | 14637578 | C-T | HET | ||
SBS | Chr10 | 9093118 | T-G | HET | ||
SBS | Chr10 | 9390990 | A-G | HET | ||
SBS | Chr10 | 17837836 | G-A | Homo | ||
SBS | Chr11 | 12761900 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g22240 |
SBS | Chr11 | 13402199 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g23238 |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 916160 | 916169 | 9 | LOC_Os10g02480 |
Deletion | Chr9 | 1084638 | 1084639 | 1 | |
Deletion | Chr3 | 6036709 | 6036711 | 2 | |
Deletion | Chr3 | 7352738 | 7352740 | 2 | |
Deletion | Chr11 | 8062208 | 8062235 | 27 | |
Deletion | Chr11 | 10479878 | 10479879 | 1 | |
Deletion | Chr12 | 11463104 | 11463107 | 3 | LOC_Os12g19670 |
Deletion | Chr8 | 14086576 | 14086662 | 86 | |
Deletion | Chr4 | 16239747 | 16239752 | 5 | |
Deletion | Chr10 | 19915808 | 19915815 | 7 | |
Deletion | Chr10 | 21782853 | 21782854 | 1 | |
Deletion | Chr5 | 25290001 | 25369000 | 78999 | 14 |
Deletion | Chr7 | 29201317 | 29201321 | 4 | |
Deletion | Chr1 | 33976649 | 33976658 | 9 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 25246934 | 25246935 | 2 | |
Insertion | Chr12 | 4511765 | 4511769 | 5 | |
Insertion | Chr6 | 5968336 | 5968336 | 1 | |
Insertion | Chr12 | 10157173 | 10157173 | 1 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 5693866 | 6630221 | |
Inversion | Chr9 | 6538838 | 6543135 | 2 |
Inversion | Chr9 | 7227243 | 7246954 | 2 |
Inversion | Chr9 | 14706039 | 15099019 |
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 6523853 | Chr9 | 6630220 | |
Translocation | Chr11 | 6523894 | Chr9 | 6630684 | |
Translocation | Chr9 | 7227246 | Chr5 | 24582698 | LOC_Os09g12610 |
Translocation | Chr9 | 7232322 | Chr5 | 24582696 | LOC_Os09g12620 |
Translocation | Chr10 | 8060458 | Chr5 | 16540436 | 2 |
Translocation | Chr5 | 11410420 | Chr4 | 4973307 | LOC_Os04g09350 |
Translocation | Chr9 | 11727109 | Chr4 | 17810694 | LOC_Os09g19610 |
Translocation | Chr10 | 12226487 | Chr9 | 20613099 | |
Translocation | Chr12 | 15191193 | Chr4 | 18885976 | |
Translocation | Chr8 | 28411992 | Chr7 | 8173490 | LOC_Os07g14320 |