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Mutant Information

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11775298	G-A	HET
SBS	Chr1	13491682	G-A	HET
SBS	Chr1	22490037	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39860
SBS	Chr1	27028273	C-T	HET
SBS	Chr10	22710825	T-C	HET
SBS	Chr10	2747982	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05540
SBS	Chr10	8473326	C-T	HET
SBS	Chr12	1642506	C-T	HET
SBS	Chr12	5453661	C-A	HET
SBS	Chr2	10621032	T-C	Homo
SBS	Chr2	12607052	C-T	HET
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	28803451	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g47180
SBS	Chr2	8185346	C-T	Homo
SBS	Chr2	8185348	T-C	Homo
SBS	Chr3	18794408	T-G	HET
SBS	Chr3	18794409	T-A	HET
SBS	Chr3	19966740	C-T	HET
SBS	Chr3	26749322	C-T	HET
SBS	Chr3	30359709	T-A	HET
SBS	Chr4	19958953	A-G	HET
SBS	Chr4	21407008	T-A	HET
SBS	Chr4	32836250	A-G	HET
SBS	Chr4	34479039	A-G	HET
SBS	Chr4	5157905	C-G	HET
SBS	Chr4	9543030	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17440
SBS	Chr5	15383830	A-C	Homo
SBS	Chr5	2144616	T-C	Homo
SBS	Chr5	2425092	G-A	HET
SBS	Chr5	24979318	C-A	Homo
SBS	Chr5	2795501	C-T	Homo
SBS	Chr5	5078344	G-A	Homo
SBS	Chr6	15035396	A-T	HET
SBS	Chr6	7549693	C-T	Homo
SBS	Chr7	14468076	T-C	Homo
SBS	Chr7	22529811	A-G	Homo
SBS	Chr7	671175	T-C	HET
SBS	Chr7	9336963	G-A	Homo
SBS	Chr8	18474471	A-G	Homo
SBS	Chr8	23982985	C-T	HET
SBS	Chr8	8152409	G-A	Homo
SBS	Chr8	9629003	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g15840
SBS	Chr9	11001375	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g17980
SBS	Chr9	11906212	G-A	Homo
SBS	Chr9	1232203	A-G	Homo
SBS	Chr9	19176353	T-A	HET
SBS	Chr9	6557264	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11740

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1645684	1645690	6
Deletion	Chr8	9050176	9050185	9
Deletion	Chr5	9155290	9155299	9
Deletion	Chr3	9816814	9816820	6
Deletion	Chr3	12056001	12087000	30999	3
Deletion	Chr2	17242922	17242923	1
Deletion	Chr5	17542969	17542970	1	LOC_Os05g30270
Deletion	Chr7	23653812	23653813	1
Deletion	Chr4	25873024	25873025	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6156047	6156048	2
Insertion	Chr7	2386978	2386978	1
Insertion	Chr8	6771244	6771244	1
Insertion	Chr9	2067615	2067620	6

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10688903	11174267	LOC_Os04g20054
Inversion	Chr9	10966188	11001938	LOC_Os09g17990
Inversion	Chr3	19032224	19135979
Inversion	Chr3	19044027	19135990	LOC_Os03g33300
Inversion	Chr3	30327592	30330137	LOC_Os03g52880
Inversion	Chr3	30404084	30543682

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2363990	Chr3	25310475
Translocation	Chr8	9895352	Chr7	18139868	LOC_Os07g30650
Translocation	Chr6	20607133	Chr3	24684655
Translocation	Chr10	21733824	Chr2	18290362	2
Translocation	Chr11	28627443	Chr4	35224945

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