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| Mutant Information |
|---|
| Mutant Name | FN4231-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4231-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15958669 | A-C | Homo | ||
| SBS | Chr1 | 8412263 | G-A | Homo | ||
| SBS | Chr11 | 14473168 | A-C | HET | ||
| SBS | Chr2 | 14398799 | T-C | HET | ||
| SBS | Chr2 | 14566402 | G-A | HET | ||
| SBS | Chr2 | 4315245 | C-G | HET | ||
| SBS | Chr3 | 10161661 | G-A | Homo | ||
| SBS | Chr3 | 18786442 | T-C | HET | ||
| SBS | Chr3 | 35772339 | T-A | Homo | ||
| SBS | Chr4 | 1015882 | G-A | HET | ||
| SBS | Chr4 | 11947817 | C-G | HET | ||
| SBS | Chr4 | 12283921 | A-G | HET | ||
| SBS | Chr4 | 21389246 | C-T | HET | ||
| SBS | Chr4 | 29994423 | C-A | HET | ||
| SBS | Chr5 | 14633362 | G-A | HET | ||
| SBS | Chr5 | 17052033 | T-A | HET | STOP_GAINED | LOC_Os05g29050 |
| SBS | Chr5 | 8723386 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g15430 |
| SBS | Chr6 | 21738315 | C-T | HET | ||
| SBS | Chr6 | 22399536 | T-G | HET | ||
| SBS | Chr6 | 25605081 | G-A | HET | ||
| SBS | Chr6 | 8588972 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g15150 |
| SBS | Chr7 | 5208327 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g09780 |
| SBS | Chr7 | 7410709 | T-C | HET | ||
| SBS | Chr8 | 19930292 | T-C | Homo | ||
| SBS | Chr8 | 19991951 | A-C | Homo | ||
| SBS | Chr8 | 22186080 | C-T | Homo | ||
| SBS | Chr9 | 5400388 | C-T | Homo | ||
| SBS | Chr9 | 6111364 | G-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 6159345 | 6159346 | 1 | |
| Deletion | Chr10 | 11128566 | 11128593 | 27 | LOC_Os10g21700 |
| Deletion | Chr4 | 11689016 | 11689023 | 7 | |
| Deletion | Chr11 | 15637735 | 15637739 | 4 | |
| Deletion | Chr9 | 17076034 | 17076070 | 36 | |
| Deletion | Chr8 | 17546455 | 17546456 | 1 | |
| Deletion | Chr12 | 19325840 | 19325852 | 12 | |
| Deletion | Chr6 | 20684001 | 20729000 | 44999 | 7 |
| Deletion | Chr2 | 33668280 | 33668281 | 1 | |
| Deletion | Chr4 | 34930799 | 34930802 | 3 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 11702955 | 11702955 | 1 | |
| Insertion | Chr11 | 20238535 | 20238546 | 12 | |
| Insertion | Chr3 | 15409839 | 15409840 | 2 | |
| Insertion | Chr5 | 27328734 | 27328734 | 1 | |
| Insertion | Chr7 | 20864020 | 20864020 | 1 | LOC_Os07g34810 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 1825042 | 2367417 | LOC_Os05g04914 |
| Inversion | Chr2 | 14561632 | 14570509 | LOC_Os02g25090 |
| Inversion | Chr2 | 14561637 | 14570523 | LOC_Os02g25090 |
| Inversion | Chr12 | 20011336 | 20023534 | |
| Inversion | Chr12 | 20011342 | 20023543 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 1825038 | Chr1 | 15347980 | |
| Translocation | Chr5 | 2367416 | Chr1 | 15349186 | LOC_Os05g04914 |
| Translocation | Chr7 | 10656368 | Chr3 | 19428569 | |
| Translocation | Chr8 | 18421763 | Chr2 | 18426414 | LOC_Os08g29990 |
| Translocation | Chr7 | 26406884 | Chr5 | 18468143 | 2 |
| Translocation | Chr7 | 26407148 | Chr5 | 18468161 | 2 |